GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000704-TA|BGIBMGA000704-PA|IPR005123|2OG-Fe(II)
oxygenase, IPR001006|Procollagen-lysine 5-dioxygenase,
IPR006620|Prolyl 4-hydroxylase, alpha subunit
         (271 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   5.6  
AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    22   5.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.4  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   7.4  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   7.4  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 6/22 (27%), Positives = 14/22 (63%)

Query: 117 EAYGKWSDGTNNDKRLESGYEA 138
           + YG W+D ++ND+     +++
Sbjct: 32  QIYGIWADDSDNDEEERPSFKS 53


>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 152 ERHWLQILKDYVRPLQELVFTGYYH 176
           ++H  +I+ D  R      + GYYH
Sbjct: 8   KKHITEIIADIYRQFPTDRYVGYYH 32


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 115  IMEAYGKWSDGTNNDKRLESGYEA 138
            I++A+  W+D  N   +  +GY+A
Sbjct: 1443 IVKAHDSWADFDNQFYKRVTGYKA 1466


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 5/26 (19%), Positives = 15/26 (57%)

Query: 143  DIHMSQVGLERHWLQILKDYVRPLQE 168
            ++H      E  W ++++ Y+ P+++
Sbjct: 1184 EVHYLNRNEETFWNELIEQYLHPIED 1209


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 5/26 (19%), Positives = 15/26 (57%)

Query: 143  DIHMSQVGLERHWLQILKDYVRPLQE 168
            ++H      E  W ++++ Y+ P+++
Sbjct: 1184 EVHYLNRNEETFWNELIEQYLHPIED 1209


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.138    0.446 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,831
Number of Sequences: 317
Number of extensions: 3581
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 5
length of query: 271
length of database: 114,650
effective HSP length: 56
effective length of query: 215
effective length of database: 96,898
effective search space: 20833070
effective search space used: 20833070
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)