GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000704-TA|BGIBMGA000704-PA|IPR005123|2OG-Fe(II)
oxygenase, IPR001006|Procollagen-lysine 5-dioxygenase,
IPR006620|Prolyl 4-hydroxylase, alpha subunit
         (271 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    29   0.94 
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    27   3.8  
SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subuni...    26   5.0  
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    26   6.6  
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    26   6.6  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    26   6.6  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    25   8.7  
SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb...    25   8.7  

>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 131 RLESGYEAVPTRDIHMSQVGLERHWLQILKDYVRPLQELVFTGYYHNPPASIMN-FVVRY 189
           R ++G E +P   +    V LERH+    K Y   LQE+     Y N   SI++ FV R 
Sbjct: 351 RAQTGLE-IP--QLAQELVQLERHYTHFAKAYTALLQEIHRRQTYENCVRSIVDEFVGRL 407

Query: 190 RPDEQ 194
             ++Q
Sbjct: 408 EKEQQ 412


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 175 YHNPPASIMNFVVR-YRPDEQPSLRPHHDSSTYTINLALNT 214
           Y  PP+ ++N  +  + PD QP L     S++   NL++ T
Sbjct: 206 YQRPPSELINSRISDFFPDHQPKLLEKTISNSLRRNLSIRT 246


>SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subunit
           Rpc53|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 330

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/17 (64%), Positives = 11/17 (64%)

Query: 17  EGHDSDMAFCASLRELN 33
           EGHD DM     LRELN
Sbjct: 100 EGHDEDMVDILKLRELN 116


>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 50  PETYDITKTHPDMYQLFENNMEWTTRYLHPEYLANFEEDRKHLMP 94
           P   D+TK +  +    +N +     YL  E L+N  E  +  MP
Sbjct: 428 PRRRDLTKEYGPITYAMQNELAERCNYLSAEQLSNVAEILREEMP 472


>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)

Query: 143 DIHMSQVGLERHWLQILKDY---VRPLQELVFTGYYH 176
           D H       RHWL++ KDY   V    +L+  G Y+
Sbjct: 579 DSHYEPSKRSRHWLKVKKDYLSGVGDSLDLIVIGAYY 615


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 108 FCDEWIAIMEAYGKWSDGTNNDKRL 132
           +  EW A +E  G+W D  N+ K L
Sbjct: 121 YASEWRATVERLGRWIDFDNDYKTL 145


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 5/52 (9%)

Query: 175 YHNPPASIMNFVVRYRPDEQPSLRPHHDSSTYTINLALNTPNVDYEGGGCRF 226
           + NPP    +F     PD Q +++PH DS     N  L    V   G  C F
Sbjct: 65  FKNPPKDGTSF-----PDLQKAVKPHVDSFNALTNAGLLNYAVKEIGEKCAF 111


>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 14/90 (15%)

Query: 102 PLMSDRFCDEWIAIMEAYGKWSDGTN-------NDKRLESGYEAVPTRDIHMSQVGLERH 154
           P++ D F D+   + E YG+               KR ES Y+     +  + ++G E+ 
Sbjct: 337 PILMDSFGDDLQKLKETYGEEEYNLYLVDPYRYRVKRKESFYDLAVRLEPLILELGREQR 396

Query: 155 WLQIL--KDYVRPLQELVFTGYYHNPPASI 182
            + ++  K  +R     VF GYY N PA +
Sbjct: 397 DVLLIGSKSIIR-----VFYGYYMNVPAKV 421


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.138    0.446 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,458,013
Number of Sequences: 5004
Number of extensions: 66888
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 134
Number of HSP's gapped (non-prelim): 8
length of query: 271
length of database: 2,362,478
effective HSP length: 72
effective length of query: 199
effective length of database: 2,002,190
effective search space: 398435810
effective search space used: 398435810
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)