GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000704-TA|BGIBMGA000704-PA|IPR005123|2OG-Fe(II)
oxygenase, IPR001006|Procollagen-lysine 5-dioxygenase,
IPR006620|Prolyl 4-hydroxylase, alpha subunit
         (271 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0574 + 4263247-4263615,4263945-4263992,4264308-4264514,426...    45   6e-05
01_05_0033 + 17390571-17390894,17394152-17394199,17394479-173945...    40   0.002
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    33   0.24 
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251     30   2.3  
08_02_1550 - 27818271-27818618,27818743-27818955,27819079-278195...    29   3.0  
08_01_0180 - 1524302-1524877,1525998-1527056                           28   7.0  
02_05_0078 - 25656695-25656888,25656941-25657127,25657765-256580...    28   7.0  
08_01_0231 + 1851689-1851733,1851854-1852139,1852777-1853444           28   9.2  
01_06_0242 + 27827272-27827517,27828420-27828478,27828620-278287...    28   9.2  

>01_01_0574 +
           4263247-4263615,4263945-4263992,4264308-4264514,
           4264670-4264826,4264958-4265041,4265785-4265909,
           4268100-4268218,4268535-4268619,4269087-4269134
          Length = 413

 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 49/196 (25%), Positives = 79/196 (40%), Gaps = 18/196 (9%)

Query: 84  NFEEDRKHLM--PCTDVYWFPLMSDRFCDEWIAIMEAYGKWSDGTNNDKRLESGYEAVPT 141
           N EE    +M  P   V+ FP++   FC   ++ +  + +W+   N      +  +    
Sbjct: 175 NTEESITSIMMEPAPGVFAFPMLKPSFCQMLMSEVNNFLRWAQSANQRIMRPTSLDR-HG 233

Query: 142 RDIHMSQVGLERHWLQILKDYVRPLQELVFTGYYHNPPASIMNFVVRYRPDEQPSLRPHH 201
           R   +S  GL+     ++KD++ P+  ++F     N   S   FV+ Y   E    R  H
Sbjct: 234 RGAALSDFGLQEMLDNLMKDFISPMSTVLFPEVGGNTLDSHHTFVLEY--GEADGARGFH 291

Query: 202 -DSSTYTINLAL--NTPNVDYEGGGCRFIRYNCS--------VRNTKKGWLLMHPGRLTH 250
            D S  T+N+ L  +    D    G R   +  S        V     G +L+H G  +H
Sbjct: 292 VDDSEVTLNICLGKHFTGADMYFRGIRCGNHVNSGTHDEEYFVHPNVPGQVLLHHG--SH 349

Query: 251 YHEGLLVTKGTRYIMI 266
            H    VT G R  M+
Sbjct: 350 RHGVFSVTSGRRVNMV 365


>01_05_0033 +
           17390571-17390894,17394152-17394199,17394479-17394526,
           17395224-17395400,17395492-17395642,17395742-17395828,
           17397236-17397360,17397608-17397726,17399983-17400082,
           17400188-17400223
          Length = 404

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 36/150 (24%), Positives = 59/150 (39%), Gaps = 8/150 (5%)

Query: 84  NFEEDRKHLM--PCTDVYWFPLMSDRFCDEWIAIMEAYGKWSDGTNNDKRLESGYEAVPT 141
           N EE  + +M  P   VY F ++   FC+  +  +E + KW   T   K +      +  
Sbjct: 166 NTEESFRSIMTEPVPGVYSFAMLQPNFCEMLLQEVENFEKWVH-TMKFKIMRP--NTMNK 222

Query: 142 RDIHMSQVGLERHWLQILKDYVRPLQELVFTGYYHNPPASIMNFVVRYRPDEQPSLRPHH 201
               +   GLE    Q ++ ++ P+  +++         +   FVV Y  D    L  H 
Sbjct: 223 YGAVLDDFGLEVMLNQFMEQFIAPMSTVLYPEVGGGTLDTHHAFVVEYGKDRDVELGFHV 282

Query: 202 DSSTYTINLALNTPNVDYEGGGCRFIRYNC 231
           D S  T+N+ L      + GG   F    C
Sbjct: 283 DDSEVTLNVCLGK---QFSGGELYFRGIRC 309


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 123 SDGTNNDKRLESGYEAVPTRDIHMSQVGLERHW-LQILKDYVRPLQELVFTGYYHNPPA 180
           +D     K +E  + A  +R +H ++ G+E  W L +L D+ R   + V   +  +P A
Sbjct: 423 NDREKQIKAIEDSFRAAKSRPVHQTKRGMEAEWVLPLLPDFDRYDDQFVMVNFDGDPTA 481


>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
          Length = 1821

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/26 (42%), Positives = 18/26 (69%)

Query: 144  IHMSQVGLERHWLQILKDYVRPLQEL 169
            +H+ + G+ R WL +L  +V+ LQEL
Sbjct: 1175 LHIEKCGIMRKWLSLLLQHVQALQEL 1200


>08_02_1550 -
           27818271-27818618,27818743-27818955,27819079-27819597,
           27820239-27820357,27820457-27820763,27820840-27820922,
           27821027-27821204,27821328-27821401,27822078-27822293,
           27822724-27822757
          Length = 696

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 119 YGKWSDGTNNDKRLESGYEAVPTRDIH 145
           YG W+  TN +K+L+S Y     ++ H
Sbjct: 476 YGVWASTTNGNKKLDSAYREAKEKEEH 502


>08_01_0180 - 1524302-1524877,1525998-1527056
          Length = 544

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 186 VVRYRPDEQPSLRPHHDSSTYTINLALNTPNVDY---EGGGCRFIRYNC 231
           V+RY P  +P   P  D   Y++ +  N   V     +GGG   +R NC
Sbjct: 433 VLRYHPRRRPCWLPAKDLGGYSVFVGKNNNAVALRVDDGGGAPGLRGNC 481


>02_05_0078 -
           25656695-25656888,25656941-25657127,25657765-25658067,
           25658152-25658296,25658376-25658613,25658694-25658904,
           25659060-25659175,25659420-25659468
          Length = 480

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 12/96 (12%)

Query: 9   AKAVTYVQEGHDSDMAFCASLRELNIFMYVSNEEDFGHLVNPETYDITKTHPDMYQLFEN 68
           AK ++Y+ E H+  +     ++  N+ +      D  ++     + I K  PD       
Sbjct: 147 AKGLSYLHEEHEPSIVH-RDIKASNVLL------DRNYIPKIGDFGIAKLFPDNVSHVST 199

Query: 69  NMEWTTRYLHPEYLANFEEDRKHLMPCTDVYWFPLM 104
            +  TT Y+ PEY+ + +  +K      DVY F ++
Sbjct: 200 RVIGTTGYMAPEYVVHGQLTKK-----ADVYSFGVL 230


>08_01_0231 + 1851689-1851733,1851854-1852139,1852777-1853444
          Length = 332

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/45 (28%), Positives = 23/45 (51%)

Query: 126 TNNDKRLESGYEAVPTRDIHMSQVGLERHWLQILKDYVRPLQELV 170
           T  DK  E   E  P+ D ++    L + +  ++KD  R L+E++
Sbjct: 4   TKKDKGKEKIKEPKPSDDFYLDLGDLPKSYANLMKDIPRRLEEII 48


>01_06_0242 +
           27827272-27827517,27828420-27828478,27828620-27828701,
           27828836-27828940
          Length = 163

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)

Query: 174 YYHNPPASIMNFVVRYRPDEQPSLRPHHDSSTYTINLALNT 214
           Y HNP  ++  F     P+E   LR HHD S    + ++N+
Sbjct: 115 YTHNPSITLPLF----EPEESARLRGHHDRSRSADSTSMNS 151


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.138    0.446 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,029,821
Number of Sequences: 37544
Number of extensions: 396133
Number of successful extensions: 705
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 700
Number of HSP's gapped (non-prelim): 9
length of query: 271
length of database: 14,793,348
effective HSP length: 81
effective length of query: 190
effective length of database: 11,752,284
effective search space: 2232933960
effective search space used: 2232933960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)