GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000704-TA|BGIBMGA000704-PA|IPR005123|2OG-Fe(II)
oxygenase, IPR001006|Procollagen-lysine 5-dioxygenase,
IPR006620|Prolyl 4-hydroxylase, alpha subunit
         (271 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66512-7|CAA91321.1|  730|Caenorhabditis elegans Hypothetical pr...   322   1e-88
M32877-1|AAA28001.1|  669|Caenorhabditis elegans daf-1 protein.        35   0.071
AF067616-10|AAC19189.2|  668|Caenorhabditis elegans Abnormal dau...    35   0.071
AF067616-9|AAP82657.1|  669|Caenorhabditis elegans Abnormal daue...    35   0.071
AC006790-8|AAF60730.1|  294|Caenorhabditis elegans Hypothetical ...    30   2.0  
Z68882-12|CAA93103.2|  204|Caenorhabditis elegans Hypothetical p...    29   3.5  
U67951-2|AAB07570.2|  302|Caenorhabditis elegans Regulator of fu...    29   4.7  
U67951-1|AAQ65207.1|  315|Caenorhabditis elegans Regulator of fu...    29   4.7  
AY115477-1|AAM55473.1|  303|Caenorhabditis elegans zinc finger p...    29   4.7  
AL117205-5|CAB55163.1|  456|Caenorhabditis elegans Hypothetical ...    28   6.2  
AL117205-4|CAB55162.1|  441|Caenorhabditis elegans Hypothetical ...    28   6.2  
AF016441-2|AAB65912.2|  417|Caenorhabditis elegans Hypothetical ...    28   6.2  
AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical ...    28   6.2  
U51998-6|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    28   8.2  
U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>Z66512-7|CAA91321.1|  730|Caenorhabditis elegans Hypothetical
           protein F52H3.1 protein.
          Length = 730

 Score =  322 bits (792), Expect = 1e-88
 Identities = 145/256 (56%), Positives = 181/256 (70%), Gaps = 4/256 (1%)

Query: 20  DSDMAFCASLRELNIFMYVSNEEDFGHLVNPETYDITKT----HPDMYQLFENNMEWTTR 75
           D DM+ C   R+   F+Y+ NE+ +G L+  + Y  T T    HP+M+Q+FEN   W  R
Sbjct: 475 DPDMSMCKFARDNGHFLYIDNEKYYGFLIVSDEYAETVTEGKWHPEMWQIFENRELWEAR 534

Query: 76  YLHPEYLANFEEDRKHLMPCTDVYWFPLMSDRFCDEWIAIMEAYGKWSDGTNNDKRLESG 135
           Y+HP Y    E +      C DVY FPLMS+RFC+E I  ME +G+WSDG+NNDKRL  G
Sbjct: 535 YIHPGYHKIMEPEHVVDQACPDVYDFPLMSERFCEELIEEMEGFGRWSDGSNNDKRLAGG 594

Query: 136 YEAVPTRDIHMSQVGLERHWLQILKDYVRPLQELVFTGYYHNPPASIMNFVVRYRPDEQP 195
           YE VPTRDIHM+QVG ER WL  +  YVRP+QE  F GYYH P  S M FVVRY+P+EQP
Sbjct: 595 YENVPTRDIHMNQVGFERQWLYFMDTYVRPVQEKTFIGYYHQPVESNMMFVVRYKPEEQP 654

Query: 196 SLRPHHDSSTYTINLALNTPNVDYEGGGCRFIRYNCSVRNTKKGWLLMHPGRLTHYHEGL 255
           SLRPHHD+ST++I++ALN    DYEGGG R+IRYNC+V   + G+ +M PGRLTH HEGL
Sbjct: 655 SLRPHHDASTFSIDIALNKKGRDYEGGGVRYIRYNCTVPADEVGYAMMFPGRLTHLHEGL 714

Query: 256 LVTKGTRYIMISFVDP 271
             TKGTRYIM+SF++P
Sbjct: 715 ATTKGTRYIMVSFINP 730


>M32877-1|AAA28001.1|  669|Caenorhabditis elegans daf-1 protein.
          Length = 669

 Score = 34.7 bits (76), Expect = 0.071
 Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 22/143 (15%)

Query: 67  ENNMEWTTRYLHPEYL-ANFEEDRKHLMPCTDVYWFPL-MSDRFC---DEWIAIMEA--- 118
           EN    T RYL PE L +  +        C DVY F L M +  C   D  +   EA   
Sbjct: 460 ENYKCGTVRYLAPEILNSTMQFTVFESYQCADVYSFSLVMWETLCRCEDGDVLPREAATV 519

Query: 119 --YGKWSDGTNNDKRLESGYEAVPTRDIHMSQVGLERHWLQILKDY--VRPLQELVFTGY 174
             Y +W+D    D ++   ++ V TR +  ++  L   W    KD+  ++ + E++ T +
Sbjct: 520 IPYIEWTDRDPQDAQM---FDVVCTRRLRPTENPL---W----KDHPEMKHIMEIIKTCW 569

Query: 175 YHNPPASIMNFVVRYRPDEQPSL 197
             NP A   +++ R R DE+  L
Sbjct: 570 NGNPSARFTSYICRKRMDERQQL 592


>AF067616-10|AAC19189.2|  668|Caenorhabditis elegans Abnormal dauer
           formation protein1, isoform b protein.
          Length = 668

 Score = 34.7 bits (76), Expect = 0.071
 Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 22/141 (15%)

Query: 69  NMEWTTRYLHPEYL-ANFEEDRKHLMPCTDVYWFPL-MSDRFC---DEWIAIMEA----- 118
           N +  TRYL PE L +  +        C DVY F L M +  C   D  +   EA     
Sbjct: 461 NYKCGTRYLAPEILNSTMQFTVFESYQCADVYSFSLVMWETLCRCEDGDVLPREAATVIP 520

Query: 119 YGKWSDGTNNDKRLESGYEAVPTRDIHMSQVGLERHWLQILKDY--VRPLQELVFTGYYH 176
           Y +W+D    D ++   ++ V TR +  ++  L   W    KD+  ++ + E++ T +  
Sbjct: 521 YIEWTDRDPQDAQM---FDVVCTRRLRPTENPL---W----KDHPEMKHIMEIIKTCWNG 570

Query: 177 NPPASIMNFVVRYRPDEQPSL 197
           NP A   +++ R R DE+  L
Sbjct: 571 NPSARFTSYICRKRMDERQQL 591


>AF067616-9|AAP82657.1|  669|Caenorhabditis elegans Abnormal dauer
           formation protein1, isoform a protein.
          Length = 669

 Score = 34.7 bits (76), Expect = 0.071
 Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 22/143 (15%)

Query: 67  ENNMEWTTRYLHPEYL-ANFEEDRKHLMPCTDVYWFPL-MSDRFC---DEWIAIMEA--- 118
           EN    T RYL PE L +  +        C DVY F L M +  C   D  +   EA   
Sbjct: 460 ENYKCGTVRYLAPEILNSTMQFTVFESYQCADVYSFSLVMWETLCRCEDGDVLPREAATV 519

Query: 119 --YGKWSDGTNNDKRLESGYEAVPTRDIHMSQVGLERHWLQILKDY--VRPLQELVFTGY 174
             Y +W+D    D ++   ++ V TR +  ++  L   W    KD+  ++ + E++ T +
Sbjct: 520 IPYIEWTDRDPQDAQM---FDVVCTRRLRPTENPL---W----KDHPEMKHIMEIIKTCW 569

Query: 175 YHNPPASIMNFVVRYRPDEQPSL 197
             NP A   +++ R R DE+  L
Sbjct: 570 NGNPSARFTSYICRKRMDERQQL 592


>AC006790-8|AAF60730.1|  294|Caenorhabditis elegans Hypothetical
           protein Y49F6B.3 protein.
          Length = 294

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 201 HDSSTYTIN--LALNTPNVDYEGGGCRFIRYNCSVRNTKKG 239
           HD STYT+N  L +N+PN+    G    +  N  +++  KG
Sbjct: 167 HDDSTYTLNDVLVMNSPNILISLGTLSDVELNLYLKHFIKG 207


>Z68882-12|CAA93103.2|  204|Caenorhabditis elegans Hypothetical
           protein C47E12.9 protein.
          Length = 204

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 54  DITKTHPDMYQLFENNMEWTTRYLHP-EYLANFEEDRKHLMPCTDVYWFPLMSDRFC 109
           D    H   Y L +   +W     +      N E+ RK +M   D  W P+M+  FC
Sbjct: 24  DQVMVHTFEYILHDYAKQWIVELTYEFNEQNNLEDSRKTVMKAIDQNWAPVMAIPFC 80


>U67951-2|AAB07570.2|  302|Caenorhabditis elegans Regulator of
           fusion protein 2,isoform a protein.
          Length = 302

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 173 GYYHNPPASIMNFVVRYRPDEQPSLRPHHDSSTYTINLALNTPNVD 218
           G  +  P+S+      +  +++  L P HD S+ + N ++ TP  D
Sbjct: 205 GKTYTHPSSLRKHTKVHENEKKSQLSPEHDESSDSGNASIGTPTTD 250


>U67951-1|AAQ65207.1|  315|Caenorhabditis elegans Regulator of
           fusion protein 2,isoform b protein.
          Length = 315

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 173 GYYHNPPASIMNFVVRYRPDEQPSLRPHHDSSTYTINLALNTPNVD 218
           G  +  P+S+      +  +++  L P HD S+ + N ++ TP  D
Sbjct: 218 GKTYTHPSSLRKHTKVHENEKKSQLSPEHDESSDSGNASIGTPTTD 263


>AY115477-1|AAM55473.1|  303|Caenorhabditis elegans zinc finger
           protein REF-2 protein.
          Length = 303

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 173 GYYHNPPASIMNFVVRYRPDEQPSLRPHHDSSTYTINLALNTPNVD 218
           G  +  P+S+      +  +++  L P HD S+ + N ++ TP  D
Sbjct: 206 GKTYTHPSSLRKHTKVHENEKKSQLSPEHDESSDSGNASIGTPTTD 251


>AL117205-5|CAB55163.1|  456|Caenorhabditis elegans Hypothetical
           protein Y116A8A.6 protein.
          Length = 456

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 209 NLALNTPNVDYEGGGCRFIRYNCSVRNTKKGWLLM--HPGRLTHYH 252
           N  L  P+++  G G  F        N+K GWLL+  H  R T  +
Sbjct: 38  NTFLPIPSINQTGKGFGFFNDKTYTYNSKSGWLLLAGHKNRSTRVY 83


>AL117205-4|CAB55162.1|  441|Caenorhabditis elegans Hypothetical
           protein Y116A8A.4 protein.
          Length = 441

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 209 NLALNTPNVDYEGGGCRFIRYNCSVRNTKKGWLLM--HPGRLTHYH 252
           N  L  P+++  G G  F        N+K GWLL+  H  R T  +
Sbjct: 38  NTFLPIPSINQTGKGFGFFNDKTYTYNSKSGWLLLAGHKNRSTRVY 83


>AF016441-2|AAB65912.2|  417|Caenorhabditis elegans Hypothetical
           protein M03F8.5 protein.
          Length = 417

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 27  ASLRELNIFMYVSNEEDFGHLVNPETYD--ITKTHPDMYQLFENNMEWTTRYLHPEYLAN 84
           +++  L IF     E +   L++ ET D  I K  P    L  + ++W  + L PEY+  
Sbjct: 245 SAVNMLPIFANELQETESMSLID-ETGDVNINKILPSKTPLNPDTIQWIWKQLPPEYITM 303

Query: 85  FEEDRKH 91
           + +D  H
Sbjct: 304 YNDDIMH 310


>AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical
            protein R155.2 protein.
          Length = 1308

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 5/104 (4%)

Query: 11   AVTYV--QEGHDSDMAFCASLRELNIFMYVSNEEDFGHLVNPETYDITKTHPDMYQLFEN 68
            AV Y+  ++   SD     S  +   F   S E    ++ +PE  D+ K H +M     N
Sbjct: 915  AVKYICDRDRRYSDFRRNESTFDFMKFFKTSYENKVANMQSPEVSDLVKKH-EMDLRVAN 973

Query: 69   NMEWTTRYLHPEYLANFEEDRKH--LMPCTDVYWFPLMSDRFCD 110
             +   TR +   Y   F ++  H   + C D   F LM    C+
Sbjct: 974  PLIEKTRVILKGYKKQFNDNFLHANYVTCPDGMRFILMQSPQCE 1017


>U51998-6|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 177 NPPASIMNFVVRYRPDEQPSLRPHHDSSTYTINLALNTPNVDYEG 221
           N  A    F + YRPD + +  P + + T + N A+  P + + G
Sbjct: 50  NQNAQDCKFTLTYRPDYRKATSPENITVTVSANSAVEVPVLSWYG 94


>U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical
           protein C12D12.1b protein.
          Length = 648

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 177 NPPASIMNFVVRYRPDEQPSLRPHHDSSTYTINLALNTPNVDYEG 221
           N  A    F + YRPD + +  P + + T + N A+  P + + G
Sbjct: 50  NQNAQDCKFTLTYRPDYRKATSPENITVTVSANSAVEVPVLSWYG 94


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.138    0.446 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,760,599
Number of Sequences: 27539
Number of extensions: 353958
Number of successful extensions: 609
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 601
Number of HSP's gapped (non-prelim): 15
length of query: 271
length of database: 12,573,161
effective HSP length: 80
effective length of query: 191
effective length of database: 10,370,041
effective search space: 1980677831
effective search space used: 1980677831
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)