Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000703-TA|BGIBMGA000703-PA|undefined
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    31   0.44 
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    30   0.77 
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    28   3.1  
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c...    27   5.4  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   5.4  
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    27   7.2  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    27   7.2  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    27   7.2  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    26   9.5  
SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce...    26   9.5  
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    26   9.5  

>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 44/165 (26%), Positives = 68/165 (41%), Gaps = 27/165 (16%)

Query: 137 RVLFSAEQFCWPDAKLATQYPNIEVVSPYLNSGGFIGYLPEIYEIINSNPIKDKDDDQLY 196
           R L  A+  C  DA L T  P +E+     N    I  + +I +I+       K  +QLY
Sbjct: 428 RPLSIADSEC--DAALPTVVPELEIEGSASNVHNIIS-MSKIAKIMG------KTMEQLY 478

Query: 197 YTKIYLDKDLR--ESLKITLDHKS------EIFQNLNGALSDVQLRANTTEEWPYIENVV 248
            T  Y    +   ESL+  L+         +I +NL+    D   RAN      Y + ++
Sbjct: 479 GTVNYKKNPINIIESLRADLEEWKRSLPPFQILENLDA--EDPLFRANVHLHMTYDQAII 536

Query: 249 TKLRPLIVHGNGPVKNTLNHYGNYLAKSWSVNEGCVLCKEKKIQL 293
              RP+++H    +KN  N       +   +NE C+L     I L
Sbjct: 537 IMSRPVLLH---KMKNAKNS-----PRVDRINEDCILAARHLISL 573


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
            Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 2/97 (2%)

Query: 212  ITLDHKSEIFQNLNGALSDVQLRANTTEEWPYIENVVTKLRPLIVHGNGPVKNTLNHYGN 271
            I+ + + E + +  G + D+ LR   T++ P      ++LR   V+ +  +K+ L   G 
Sbjct: 937  ISHETQMEFYVDKEGTVEDI-LR-QVTQKVPLNAEDASRLRLYEVYNHRILKSHLPTDGI 994

Query: 272  YLAKSWSVNEGCVLCKEKKIQLKEDNLPSVMMAVFIE 308
            Y    +S     V  KE+++QLK D+  S+++  F +
Sbjct: 995  YDLNEFSTAYVEVTPKEEQMQLKTDDAVSIVVQHFFK 1031


>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 14  ILCVFVILF-NSHTQATEPNDIFADEVVV 41
           IL VF IL  +SH Q  +P DI  DE V+
Sbjct: 428 ILNVFPILSKDSHLQENQPTDILTDESVI 456


>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 165 YLNSGGFIGYLPEIYEIINSNPIKDKDDDQLY 196
           +L +G F+GY P +   I +N IK KD  + Y
Sbjct: 147 FLETGPFVGYYPSVVSKIRAN-IKLKDVGENY 177


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 13/40 (32%), Positives = 23/40 (57%)

Query: 174 YLPEIYEIINSNPIKDKDDDQLYYTKIYLDKDLRESLKIT 213
           +L EIY+ I  N I   ++     + +Y+   L++S+KIT
Sbjct: 719 FLSEIYKAIKENEIIVAEEHDTELSFLYIWSKLQQSVKIT 758


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 2/29 (6%)

Query: 421 RPGKAWSN-FWGALNSAGFYARSADYMDI 448
           +P K++SN FWGA N  G++A  + + D+
Sbjct: 13  KPDKSFSNYFWGA-NDEGYHALLSRFSDV 40


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 88  KVILLKNRLEKLMKADNKEKIILFTDSYDVMFLGNLDEIVKKF--KSF-PDTRVL 139
           +++LL+ R+E   KA     ++ F  SY       LDE  K++  K+F PD R L
Sbjct: 617 QLLLLEKRMESEGKAPTALSLVAFVSSYCKQGAEGLDE-AKRYMSKNFQPDKRAL 670


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 201 YLDKDLRESLKITLDHKSEIFQNLNGALSDVQLRANTTEE 240
           Y+D ++ E+   T D+     Q+LNG +S++   A    E
Sbjct: 9   YVDSNMNETQNDTTDNFDAEMQDLNGYISEIVDEARNVSE 48


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/72 (19%), Positives = 32/72 (44%)

Query: 183 NSNPIKDKDDDQLYYTKIYLDKDLRESLKITLDHKSEIFQNLNGALSDVQLRANTTEEWP 242
           ++ P++D        + ++L       +K T+     I+  + G ++ ++ R     E P
Sbjct: 333 HAKPVEDATSTSARASNLHLRIVFYPGIKGTVGFPLPIWVEIKGFVARIRFRCELMPEVP 392

Query: 243 YIENVVTKLRPL 254
           +++NV   L  L
Sbjct: 393 FLKNVTFSLMGL 404


>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/41 (26%), Positives = 21/41 (51%)

Query: 287 KEKKIQLKEDNLPSVMMAVFIEQATPFLEDFLDQVIDTDYP 327
           +E  +++KED +  +     +  A PF  + LD ++D   P
Sbjct: 51  REYFVEVKEDFIEDLFNLTGLNLAVPFYNEALDLILDRTAP 91


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/21 (42%), Positives = 18/21 (85%)

Query: 199 KIYLDKDLRESLKITLDHKSE 219
           ++YLDKD+ E+ ++T+++ SE
Sbjct: 214 QLYLDKDIDENEEVTINYGSE 234


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.138    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,162,122
Number of Sequences: 5004
Number of extensions: 96925
Number of successful extensions: 265
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 258
Number of HSP's gapped (non-prelim): 13
length of query: 454
length of database: 2,362,478
effective HSP length: 75
effective length of query: 379
effective length of database: 1,987,178
effective search space: 753140462
effective search space used: 753140462
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)