Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000703-TA|BGIBMGA000703-PA|undefined
         (454 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    25   1.3  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   2.3  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    24   3.0  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    24   3.0  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    24   3.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   5.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   7.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   9.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   9.2  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 9/26 (34%), Positives = 17/26 (65%)

Query: 78  GDMNFPGGGQKVILLKNRLEKLMKAD 103
           G +N P G + ++ L NR++K++  D
Sbjct: 370 GRINDPEGNEYMLALSNRMQKIINND 395


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 117 VMFLGNLDEIVKKFKSFPDTRVLFSAEQFC 146
           +M   + D +VK FK+F D + L+   + C
Sbjct: 419 IMGEADCDFVVKLFKTFKDRKYLYMLMEAC 448


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 253 PLIVHGNGPVKNTLNHYGNY 272
           P I+  N P+ N  N+  NY
Sbjct: 79  PKIISNNNPLSNNYNYNNNY 98


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 174 YLPEIYEIINSNPIKDKDDDQLYYTKIYLDKDLRESLKITLDHKSEIFQN 223
           +  +++EII     K  D+D+    + Y+D  L E +K   D   +I  N
Sbjct: 88  FTEDVHEIIEQCVSKAADEDECMVARKYIDCAL-EKMKFLDDELEKIAGN 136


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 174 YLPEIYEIINSNPIKDKDDDQLYYTKIYLDKDLRESLKITLDHKSEIFQN 223
           +  +++EII     K  D+D+    + Y+D  L E +K   D   +I  N
Sbjct: 88  FTEDVHEIIEQCVSKAADEDECMVARKYIDCAL-EKMKFLDDELEKIAGN 136


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 217 KSEIFQNLNGALSDVQLRANTTEEWPYIENVVTKLRPLI 255
           K +I + L   L   QL++   E+W    N++TK +PLI
Sbjct: 362 KHDILRMLIIDLRKKQLKS--LEDWENEMNIITKGKPLI 398



 Score = 23.0 bits (47), Expect = 5.3
 Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 192 DDQLYYTKIYLDKDLRESLKITLDHKSEIFQNL-NGALSDVQLRANTTEEWPYIENV 247
           D  L    ++  KD++++ +IT D+  +  +N  N  +    ++ N      + ENV
Sbjct: 597 DPNLPKLALFATKDIKQNEEITFDYMCQSSKNSENSIMQRASMKENLNVYPEFQENV 653


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 12/46 (26%), Positives = 21/46 (45%)

Query: 272 YLAKSWSVNEGCVLCKEKKIQLKEDNLPSVMMAVFIEQATPFLEDF 317
           Y+   W    G +  K +K+   EDN+ ++ M +   +A     DF
Sbjct: 599 YMIYIWFTTSGTISEKFRKLIRIEDNVATLRMKLNPTKAASINADF 644


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 9.2
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 253  PLIVHGNGPVKNTLNHYGNYLAKSW-SVNE 281
            P   H NG ++    HY   LA  W SV+E
Sbjct: 1135 PPNTHSNGIIQGYKLHYEPILADMWRSVDE 1164


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 9.2
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 253  PLIVHGNGPVKNTLNHYGNYLAKSW-SVNE 281
            P   H NG ++    HY   LA  W SV+E
Sbjct: 1131 PPNTHSNGIIQGYKLHYEPILADMWRSVDE 1160


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.138    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,898
Number of Sequences: 429
Number of extensions: 5605
Number of successful extensions: 19
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 12
length of query: 454
length of database: 140,377
effective HSP length: 60
effective length of query: 394
effective length of database: 114,637
effective search space: 45166978
effective search space used: 45166978
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)