Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000703-TA|BGIBMGA000703-PA|undefined
         (454 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57450.2 68418.m07178 DNA repair family protein contains simi...    33   0.52 
At5g57450.1 68418.m07177 DNA repair family protein contains simi...    33   0.52 
At3g59020.1 68416.m06578 importin beta-2 subunit family protein ...    31   2.1  
At3g54850.1 68416.m06077 armadillo/beta-catenin repeat family pr...    30   3.7  
At1g69930.1 68414.m08047 glutathione S-transferase, putative sim...    29   4.8  
At4g32190.1 68417.m04581 centromeric protein-related low similar...    29   6.4  
At4g16700.1 68417.m02523 phosphatidylserine decarboxylase simila...    29   8.5  
At3g28670.1 68416.m03578 expressed protein                             29   8.5  

>At5g57450.2 68418.m07178 DNA repair family protein contains
           similarity to Swiss-Prot:O43542 DNA-repair protein XRCC3
           (X-ray repair cross-complementing protein 3) [Homo
           sapiens]
          Length = 304

 Score = 32.7 bits (71), Expect = 0.52
 Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 7/59 (11%)

Query: 384 NSACDYLFSVDSLSRLESNVLRYLLSSGYDVIAPMLTRPGKAWSNFWGALNSAGFYARS 442
           N   D + + D LS L    LRYL SSG  V+ P L   G AW+N    +NS  F +RS
Sbjct: 199 NQVTDLVETSDGLSGLRIGNLRYLYSSGRRVV-PSL---GLAWAN---CVNSRFFISRS 250


>At5g57450.1 68418.m07177 DNA repair family protein contains
           similarity to Swiss-Prot:O43542 DNA-repair protein XRCC3
           (X-ray repair cross-complementing protein 3) [Homo
           sapiens]
          Length = 304

 Score = 32.7 bits (71), Expect = 0.52
 Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 7/59 (11%)

Query: 384 NSACDYLFSVDSLSRLESNVLRYLLSSGYDVIAPMLTRPGKAWSNFWGALNSAGFYARS 442
           N   D + + D LS L    LRYL SSG  V+ P L   G AW+N    +NS  F +RS
Sbjct: 199 NQVTDLVETSDGLSGLRIGNLRYLYSSGRRVV-PSL---GLAWAN---CVNSRFFISRS 250


>At3g59020.1 68416.m06578 importin beta-2 subunit family protein
           similar to D-Importin 7/RanBP7 [Drosophila melanogaster]
           GI:7542336; contains Pfam profile PF03810: Importin-beta
           N-terminal domain
          Length = 1112

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 10/66 (15%)

Query: 268 HYGNYLAKSWSVNEGCVLCKEKKIQLKED-NLPSVMMAVFIEQATPFLE----DFLDQVI 322
           H+ N++AK W  + G     ++ I L  D N+    + VF+ Q  P L     + L  +I
Sbjct: 60  HFKNFIAKHWEPHSG-----DQNIILPSDKNVVRNQILVFVSQVPPILRVQMGECLKTII 114

Query: 323 DTDYPK 328
             DYP+
Sbjct: 115 YADYPE 120


>At3g54850.1 68416.m06077 armadillo/beta-catenin repeat family
           protein / U-box domain-containing family protein
           contains Pfam domain, PF00514:
           Armadillo/beta-catenin-like repeats and Pfam, PF04564:
           U-box domain
          Length = 632

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 5/91 (5%)

Query: 146 CWPDAKLATQYPNIEVVSPYLNSGGFIGYLPEIYEIINSNPIKDKDDDQLYYTKIYLDKD 205
           C  +  ++    +++ +S + +S GFIG +    +++    +     ++L    + L KD
Sbjct: 7   CSHEELMSRLVDSVKEISGFSSSRGFIGKIQG--DLVRRITLLSPFFEELIDVNVELKKD 64

Query: 206 LR---ESLKITLDHKSEIFQNLNGALSDVQL 233
                E+++I LD   E+F+++NG     QL
Sbjct: 65  QITGFEAMRIALDSSLELFRSVNGGSKLFQL 95


>At1g69930.1 68414.m08047 glutathione S-transferase, putative
           similar to glutathione transferase GB:CAA09188
           [Alopecurus myosuroides]
          Length = 234

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 246 NVVTKLRPLIVHGNGPVKNTLNHYGNYLAKSW 277
           N V K  P+++HGN P++ +LN    Y+ ++W
Sbjct: 56  NPVHKQIPILIHGNKPIRESLN-IVMYVDETW 86


>At4g32190.1 68417.m04581 centromeric protein-related low similarity
           to SP|Q02224 Centromeric protein E (CENP-E protein)
           {Homo sapiens}
          Length = 783

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 87  QKVILLKNRLEKLMKADNKEKIILFTDSYDVMFLGNLDEIVKKFKSFPDTRVLFSAEQFC 146
           +++ + K  LE L +   KEK +L    +D+  +   DE+ KK  +F  ++ L   ++  
Sbjct: 406 REISVQKELLEDLREELQKEKPLLELAMHDISVIQ--DELYKKANAFQVSQNLLQEKESS 463

Query: 147 WPDAKLATQYPNIEVVS 163
             +AKL  Q+   E  S
Sbjct: 464 LVEAKLEIQHLKSEQAS 480


>At4g16700.1 68417.m02523 phosphatidylserine decarboxylase similar
           to SP|P27465 Phosphatidylserine decarboxylase proenzyme
           (EC 4.1.1.65 {Cricetulus griseus}; contains Pfam profile
           PF02666: phosphatidylserine decarboxylase
          Length = 453

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 5/71 (7%)

Query: 176 PEIYEIINSNPIKDKDDDQLYYTKIYLDKDLRESLKITLDHKSEIFQNLNGALSDVQLRA 235
           P++ E ++++P+K      LYY  IYL       +    D  + + ++  G L  V  RA
Sbjct: 266 PKLRENVSASPMKG-----LYYCVIYLKPGDYHRIHSPADWNATVRRHFAGRLFPVNERA 320

Query: 236 NTTEEWPYIEN 246
             T    Y+EN
Sbjct: 321 TRTIRNLYVEN 331


>At3g28670.1 68416.m03578 expressed protein
          Length = 491

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 367 DFISEAEARNLAKERCINSACDYLFSVD--SLSRLESNVLRYLLSSGYDVIAP 417
           D++   E+  + KERCI        S+D   +S +E+     +  S +DVI+P
Sbjct: 381 DYLQPFESLEVVKERCIELMSMEHSSIDESKISEVETETSLLIAESMWDVISP 433


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.138    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,881,730
Number of Sequences: 28952
Number of extensions: 480434
Number of successful extensions: 1197
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1196
Number of HSP's gapped (non-prelim): 11
length of query: 454
length of database: 12,070,560
effective HSP length: 83
effective length of query: 371
effective length of database: 9,667,544
effective search space: 3586658824
effective search space used: 3586658824
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)