GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000703-TA|BGIBMGA000703-PA|undefined
         (454 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0223 - 1709897-1709912,1710188-1712520                           31   2.5  
12_02_0991 + 25079293-25079925,25080221-25081116,25081721-25082003     30   3.3  
12_01_0445 - 3513733-3513819,3514392-3514613,3514730-3514999,351...    30   4.4  
06_02_0162 + 12466027-12466354,12466894-12467546                       30   4.4  
01_07_0224 - 42121011-42122486                                         29   7.7  

>06_01_0223 - 1709897-1709912,1710188-1712520
          Length = 782

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 67  EVLGKGEEWSGGDMNFPGGGQKVILLKNRLEKLM-KADNKEKIILFTDSYDVMFLGNLDE 125
           ++L + E+W+  +  F    ++ I L N +E +  + DN E+   F D+ D + L NLD 
Sbjct: 400 KILSEEEQWAENERLFLESYEEEINLINEMENIENEIDNAEQYNDFIDTLDEVGLHNLDN 459

Query: 126 IVK 128
            ++
Sbjct: 460 AME 462


>12_02_0991 + 25079293-25079925,25080221-25081116,25081721-25082003
          Length = 603

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)

Query: 374 ARNLAKERCINSACDYLFSVDSLSRLESNV---LRYLLSSGYDVIAPMLTR 421
           A +L    C+ S  DYL +V  +   E NV   +R+L S  Y V +P+L R
Sbjct: 213 AESLGFHACVKSCLDYLEAVPWVGEEEDNVVSSIRHLQSKAYGV-SPLLKR 262


>12_01_0445 -
           3513733-3513819,3514392-3514613,3514730-3514999,
           3515033-3517110,3517649-3517976,3519136-3519255,
           3519299-3519352,3520115-3520154,3520344-3520411
          Length = 1088

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 7/73 (9%)

Query: 203 DKDLRESLKITLDHKSEIFQNLNGALSDVQLRANTTEE----WPYIENVVTKLRPLI--- 255
           D+D++E+LK   D  +  F  +N     V+  A  TEE    W   E+ V  L+ L+   
Sbjct: 163 DEDVKENLKSLNDKLAAAFLTINAKEELVRQHAKVTEEAVLGWEQAESEVAALKKLLEAS 222

Query: 256 VHGNGPVKNTLNH 268
              NG ++  ++H
Sbjct: 223 AQKNGSLEVQVSH 235


>06_02_0162 + 12466027-12466354,12466894-12467546
          Length = 326

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 18/65 (27%), Positives = 31/65 (47%)

Query: 67  EVLGKGEEWSGGDMNFPGGGQKVILLKNRLEKLMKADNKEKIILFTDSYDVMFLGNLDEI 126
           +VL + E+W   +       ++   L   +E + + DN E+   F DS D + L NLD  
Sbjct: 214 KVLSEEEQWEVNEKLLLESYEEENNLIEEIENIEEEDNAEQYNDFIDSLDEVGLHNLDNA 273

Query: 127 VKKFK 131
           ++  K
Sbjct: 274 MEAMK 278


>01_07_0224 - 42121011-42122486
          Length = 491

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 14/60 (23%), Positives = 27/60 (45%)

Query: 105 KEKIILFTDSYDVMFLGNLDEIVKKFKSFPDTRVLFSAEQFCWPDAKLATQYPNIEVVSP 164
           + +++L   SY+  + G   EI+     +    +L      C+P A + T++  I  V P
Sbjct: 215 RRRVVLGVLSYNPWWAGTYGEIISGLSDYHVVDLLHDKRTHCFPGAIVGTRFHGILSVDP 274


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.138    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,960,010
Number of Sequences: 37544
Number of extensions: 552624
Number of successful extensions: 1105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1104
Number of HSP's gapped (non-prelim): 5
length of query: 454
length of database: 14,793,348
effective HSP length: 84
effective length of query: 370
effective length of database: 11,639,652
effective search space: 4306671240
effective search space used: 4306671240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)