Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000703-TA|BGIBMGA000703-PA|undefined
(454 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30242| Best HMM Match : No HMM Matches (HMM E-Value=.) 147 2e-35
SB_53853| Best HMM Match : Glyco_transf_25 (HMM E-Value=4.8e-31) 48 2e-05
SB_19200| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.36
SB_30797| Best HMM Match : Notch (HMM E-Value=2.4e-07) 33 0.63
SB_345| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.83
SB_35670| Best HMM Match : ubiquitin (HMM E-Value=2) 30 4.5
SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_19824| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-26) 29 7.8
SB_8375| Best HMM Match : NUC153 (HMM E-Value=2.9) 29 7.8
>SB_30242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 147 bits (356), Expect = 2e-35
Identities = 91/229 (39%), Positives = 128/229 (55%), Gaps = 36/229 (15%)
Query: 38 EVVVLTVATDDNHGLERFLRSAKVYNIDVEVLGKGEEWSGGDMNF-PGGGQKVILLKNRL 96
E++VLTVAT++ G RF+RS Y++ V V+G W GG++ PGG K+ LLK+ +
Sbjct: 35 ELLVLTVATEETDGYTRFMRSCSHYDVPVRVIGMNTSWKGGNVRTDPGGAHKINLLKDAV 94
Query: 97 EKLMKADNKEKIILFTDSYDVMFLGNLDEIVKKFKSFPDTRVLFSAEQFCWPDAKLATQY 156
+ D K +++F+D + L + K DT SA++F
Sbjct: 95 AEY--KDKKNLVLMFSDRISTLRLA----MAK------DT----SAQEF----------- 127
Query: 157 PNIEVVSPYLNSGGFIGYLPEIYEIINSNPIKDKDDDQLYYTKIYLDKDLRESLKITLDH 216
+ +SG FIGY P ++IIN P+KD+DDDQL+YT IYLDK+ R+ + LDH
Sbjct: 128 -----IKNLYSSG-FIGYAPVFHQIINEKPVKDEDDDQLFYTNIYLDKEKRDKFNMKLDH 181
Query: 217 KSEIFQNLNGALSDVQLRANTTEEWPYIENVVTKLRPLIVHGNGPVKNT 265
K+EIF NLNGA +VQL+ + W Y N V PL VHGNGP K +
Sbjct: 182 KAEIFMNLNGAEEEVQLKFEGEKVWLY--NKVYSTTPLWVHGNGPSKES 228
Score = 105 bits (252), Expect = 7e-23
Identities = 58/158 (36%), Positives = 83/158 (52%), Gaps = 4/158 (2%)
Query: 294 KEDNLPSVMMAVFIEQATPFLEDFLDQVIDTDYPKNKIHLFIXXXXXXXXXXXXKFFGAY 353
KE + P VMMA+FI + TPF+ +F ++ DYPK KI L+I ++
Sbjct: 226 KESDYPKVMMAIFISRPTPFVPEFFKRIEALDYPKKKIALYIHNLMDGHTKEVNEWLTEE 285
Query: 354 SKE-YASAKRINSGDFISEAEARNLAKERCINSACDYLFSVDS-LSRLESNVLRYLLSSG 411
+ Y S G F EA ARN A + I S DYLF VD+ + L+ L+
Sbjct: 286 IRGLYHSVTYQGPGTF--EAAARNKAVDVAIQSGSDYLFVVDANVVYTNKKSLKLLIEQN 343
Query: 412 YDVIAPMLTRPGKAWSNFWGALNSAGFYARSADYMDIV 449
++ P +++ K WSNFWG + G+YAR+ DY+DIV
Sbjct: 344 RPLLVPKMSKHAKLWSNFWGTIGDDGYYARAEDYIDIV 381
>SB_53853| Best HMM Match : Glyco_transf_25 (HMM E-Value=4.8e-31)
Length = 534
Score = 47.6 bits (108), Expect = 2e-05
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 372 AEARNLAKERCINSACDYLFSVDSLSRLESNV-LRYLLSSGYDVIAPMLTRPGK--AWSN 428
A R LA + DYLF VD + L + + LR L+ V++PML G A+SN
Sbjct: 58 AYLRQLALDTARYWWADYLFVVDCDNFLFNPITLRQLMHEEKTVVSPMLEVFGNKSAYSN 117
Query: 429 FWGALNSAGFYARSADYMDIV 449
FWG ++ +G+Y R+ Y I+
Sbjct: 118 FWGGMDESGYYKRTDQYFTIL 138
>SB_19200| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 852
Score = 33.5 bits (73), Expect = 0.36
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 10/129 (7%)
Query: 177 EIYEIINSNPIKDKDDDQLYYTKIYLDK----DLRESLKITLDHKSEIFQNLNGALSDVQ 232
+++E+ + PI +KD L + I LD ++ E +K ++ + E FQN N LS +
Sbjct: 344 KVHEVYRAFPIPEKDS--LLASPIILDLVILCEVCERIKFKVNDEEE-FQNFNSVLSILS 400
Query: 233 --LRANTTEEWPYIENVVTKLRPLIVH-GNGPVKNTLNHYGNYLAKSWSVNEGCVLCKEK 289
L+A + N + K R I + VK L +YG++ + + +C +
Sbjct: 401 YLLKAPLVPSGAPVVNALFKQRACIENIFRILVKQQLPNYGDFELLFTQIQQFINICSKD 460
Query: 290 KIQLKEDNL 298
+IQ + L
Sbjct: 461 QIQFSVEKL 469
>SB_30797| Best HMM Match : Notch (HMM E-Value=2.4e-07)
Length = 778
Score = 32.7 bits (71), Expect = 0.63
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 164 PYLNSGGFIGYLPEIY----EIINSNPIKDKDDDQLYYTKIYLDKDLRESLKITLDHKSE 219
P++ G + L E++ E +S+ ++ +D Q ++ +Y + SL +T + E
Sbjct: 518 PHMIDVGVMSELQELFADEFEATSSHKLRSSNDMQFAFSYMYYVMGKKASLNLT-ELFEE 576
Query: 220 IFQNLNGALSDVQLRANTTEEWP 242
+ + +GALSD +LR T +P
Sbjct: 577 LDNDRSGALSDRELRTLATRLYP 599
>SB_345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1213
Score = 32.3 bits (70), Expect = 0.83
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 164 PYLNSGGFIGYLPEIY----EIINSNPIKDKDDDQLYYTKIYLDKDLRESLKITLDHKSE 219
P++ G + L E++ E +S+ ++ +D Q ++ +Y + SL +T + E
Sbjct: 917 PHMIDVGVMSELQELFADEFEATSSHKLRSSNDMQFAFSYMYYVMGKKASLNLT-ELFEE 975
Query: 220 IFQNLNGALSDVQLRANTTEEWP 242
+ + +GALSD +LR T +P
Sbjct: 976 LDSDHSGALSDRELRTLATRLYP 998
>SB_35670| Best HMM Match : ubiquitin (HMM E-Value=2)
Length = 341
Score = 29.9 bits (64), Expect = 4.5
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 92 LKNRLEKLMKADNKEKIILFTDS-YDVMFLGNLDEIVKKFKSFPDT 136
LK L +L K D+ ++ I + D+ ++ GN ++V FPDT
Sbjct: 288 LKGLLYRLYKVDSSDQKISYLDTKICTIYTGNFRDVVNGLVQFPDT 333
>SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1967
Score = 29.5 bits (63), Expect = 5.9
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 180 EIINSNPIK--DKDDDQLYYTKIYLDK--DLRESLKITLDHKSEIFQNLNGALSDVQLRA 235
E +++N +K ++ ++++ K +++ D E +K +L E FQ LN L +VQ
Sbjct: 1262 EEMSTNNVKAVEESNEKITSLKALINQKDDALEKIKASLKEAEERFQELNRTLEEVQKEK 1321
Query: 236 NTTEEWPYIENVVTKLRPLI 255
N E IE + K L+
Sbjct: 1322 NALES--KIEELTQKSETLM 1339
>SB_19824| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-26)
Length = 550
Score = 29.1 bits (62), Expect = 7.8
Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 5/148 (3%)
Query: 144 QFCWPDAKLATQYP---NIEVVSPYLNSGGFIGYLPEIYEIINSNPIKDKDDDQLYYTKI 200
Q C P +LA P N +V SP + + F G I + ++Q ++
Sbjct: 125 QCCSPSPELAPSTPTNGNAQVSSPEICNYSFDGTTKGTDSITWLGKGPNVSENQANMSQW 184
Query: 201 YLDKDLRESLKITLDHKSEIFQNLNGALSDVQLRANTTEEWPYIENVVTKLRPLIVHGNG 260
+ K + ++ + D +S F N + S +Q N+ E +ENV +P + N
Sbjct: 185 WQGKPMNWAVTSSGDVQSAQFSQPNYSSSTMQ--QNSGMEVVNVENVDVPPQPQQIVVNA 242
Query: 261 PVKNTLNHYGNYLAKSWSVNEGCVLCKE 288
N +NH +Y+ + + +L +E
Sbjct: 243 INNNVVNHATSYIQVTRTPQGQIILTQE 270
>SB_8375| Best HMM Match : NUC153 (HMM E-Value=2.9)
Length = 433
Score = 29.1 bits (62), Expect = 7.8
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 179 YEIINSNPIKDKDDDQLYYTKIYLD-KDLRESLKITLDHKSEIFQNLNGALSDVQLRANT 237
Y+ +N+N DK DD K+ + S++ + H S+I + NGA S VQ +N
Sbjct: 173 YDYVNANHDDDKGDDTYAVNKLKTQGNTIIFSIENKIMHNSQI--SFNGA-SKVQPNSNV 229
Query: 238 TE 239
TE
Sbjct: 230 TE 231
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.320 0.138 0.411
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,929,646
Number of Sequences: 59808
Number of extensions: 638056
Number of successful extensions: 1273
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1266
Number of HSP's gapped (non-prelim): 11
length of query: 454
length of database: 16,821,457
effective HSP length: 84
effective length of query: 370
effective length of database: 11,797,585
effective search space: 4365106450
effective search space used: 4365106450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)
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