GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000703-TA|BGIBMGA000703-PA|undefined
         (454 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein hom...    27   1.0  
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    24   7.4  

>AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein
           homolog protein.
          Length = 394

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 7/115 (6%)

Query: 124 DEIVKKFKSFPDTRVLFSAEQFCWPDAKLATQYPNIEVVSPYLNSGGFIGYLPEIYEII- 182
           D +     S P   +  S      P A   +  P I    P      +     + Y+   
Sbjct: 149 DHLADGLHSIPSPPITVSGSDMSSPGAPTGSSSPQI-TPRPTPVKSPYEWMKKQSYQSQP 207

Query: 183 NSNPIKDKDDDQLYYT---KIYLDKDLRESLKITLDHKSEIFQNLNGALSDVQLR 234
           N    + KD  ++ YT   ++ L+K+   +  IT+  K+E+ QNL   LS+ Q++
Sbjct: 208 NPGKTRTKDKYRVVYTDQQRLELEKEFHYTRYITIRRKAELAQNLQ--LSERQVK 260


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
           polyprotein protein.
          Length = 1726

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 3/27 (11%)

Query: 359 SAKRINS---GDFISEAEARNLAKERC 382
           +A RIN     DFIS A++ N AK+ C
Sbjct: 859 AASRINDFYVDDFISGADSENEAKQLC 885


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.320    0.138    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 467,220
Number of Sequences: 2123
Number of extensions: 20471
Number of successful extensions: 24
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 2
length of query: 454
length of database: 516,269
effective HSP length: 66
effective length of query: 388
effective length of database: 376,151
effective search space: 145946588
effective search space used: 145946588
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)