Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000702-TA|BGIBMGA000702-PA|IPR001965|Zinc finger,
PHD-type, IPR002219|Protein kinase C, phorbol ester/diacylglycerol
binding, IPR011011|Zinc finger, FYVE/PHD-type
(195 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g19260.1 68415.m02248 ELM2 domain-containing protein / PHD fi... 35 0.032
At1g50620.1 68414.m05688 PHD finger family protein contains Pfam... 35 0.042
At3g05130.1 68416.m00557 expressed protein ; expression supporte... 34 0.055
At2g27980.1 68415.m03391 expressed protein 33 0.096
At3g20280.2 68416.m02570 PHD finger family protein contains Pfam... 31 0.39
At3g20280.1 68416.m02569 PHD finger family protein contains Pfam... 31 0.39
At3g22860.1 68416.m02882 eukaryotic translation initiation facto... 31 0.51
At3g02930.1 68416.m00288 expressed protein ; expression support... 31 0.51
At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger) fa... 31 0.51
At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger) fa... 31 0.51
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela... 31 0.68
At3g18290.1 68416.m02326 zinc finger protein-related weak alignm... 31 0.68
At1g77250.1 68414.m08997 PHD finger family protein contains Pfam... 31 0.68
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c... 31 0.68
At5g53020.1 68418.m06585 expressed protein 30 0.90
At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG ... 30 0.90
At4g14700.1 68417.m02259 replication control protein, putative s... 30 1.2
At3g49760.1 68416.m05440 bZIP transcription factor family protei... 30 1.2
At2g21830.1 68415.m02594 DC1 domain-containing protein contains ... 30 1.2
At1g56040.1 68414.m06434 U-box domain-containing protein contain... 30 1.2
At5g63730.1 68418.m07999 IBR domain-containing protein contains ... 29 1.6
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 29 1.6
At4g01720.1 68417.m00223 WRKY family transcription factor simila... 29 1.6
At3g08020.1 68416.m00979 PHD finger protein-related contains low... 29 1.6
At3g05670.1 68416.m00631 PHD finger family protein contains Pfam... 29 1.6
At2g22430.1 68415.m02660 homeobox-leucine zipper protein 6 (HB-6... 29 1.6
At1g79630.2 68414.m09284 protein phosphatase 2C family protein /... 29 1.6
At1g79630.1 68414.m09285 protein phosphatase 2C family protein /... 29 1.6
At3g49140.1 68416.m05370 pentatricopeptide (PPR) repeat-containi... 29 2.1
At1g67230.1 68414.m07652 expressed protein 29 2.1
At1g53190.1 68414.m06028 zinc finger (C3HC4-type RING finger) fa... 29 2.1
At3g52100.1 68416.m05717 PHD finger family protein contains Pfam... 29 2.7
At3g18524.1 68416.m02355 DNA mismatch repair protein MSH2 (MSH2)... 29 2.7
At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger) fa... 29 2.7
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 29 2.7
At5g58610.1 68418.m07345 PHD finger transcription factor, putative 28 3.6
At5g24330.1 68418.m02867 PHD finger family protein / SET domain-... 28 3.6
At3g07290.1 68416.m00868 pentatricopeptide (PPR) repeat-containi... 28 3.6
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 28 3.6
At2g41470.1 68415.m05123 embryo-specific protein-related similar... 28 3.6
At2g14390.1 68415.m01608 hypothetical protein 28 3.6
At5g59210.1 68418.m07420 myosin heavy chain-related contains wea... 28 4.8
At5g56180.2 68418.m07009 actin-related protein, putative (ARP8) ... 28 4.8
At5g53430.1 68418.m06640 PHD finger family protein / SET domain-... 28 4.8
At5g40990.1 68418.m04983 GDSL-motif lipase/hydrolase family prot... 28 4.8
At4g40060.1 68417.m05672 homeobox-leucine zipper protein 16 (HB-... 28 4.8
At4g27910.1 68417.m04006 PHD finger protein-related / SET domain... 28 4.8
At4g17850.1 68417.m02662 hypothetical protein 28 4.8
At4g12620.1 68417.m01988 replication control protein, putative s... 28 4.8
At3g12580.1 68416.m01567 heat shock protein 70, putative / HSP70... 28 4.8
At1g05380.1 68414.m00546 PHD finger transcription factor, putative 28 4.8
At5g59210.2 68418.m07421 myosin heavy chain-related contains wea... 27 6.3
At5g41620.1 68418.m05057 expressed protein weak similarity to mi... 27 6.3
At5g22760.1 68418.m02658 PHD finger family protein contains Pfam... 27 6.3
At4g10370.1 68417.m01702 DC1 domain-containing protein contains ... 27 6.3
At3g59710.1 68416.m06662 short-chain dehydrogenase/reductase (SD... 27 6.3
At2g38580.1 68415.m04739 expressed protein ; expression supporte... 27 6.3
At2g26320.1 68415.m03158 MADS-box protein (AGL33) contains Pfam ... 27 6.3
At1g77800.1 68414.m09059 PHD finger family protein contains Pfam... 27 6.3
At5g66160.2 68418.m08334 protease-associated zinc finger (C3HC4-... 27 8.4
At5g66160.1 68418.m08335 protease-associated zinc finger (C3HC4-... 27 8.4
At5g55970.2 68418.m06981 zinc finger (C3HC4-type RING finger) fa... 27 8.4
At5g55970.1 68418.m06980 zinc finger (C3HC4-type RING finger) fa... 27 8.4
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos... 27 8.4
At5g12400.1 68418.m01458 PHD finger transcription factor, putati... 27 8.4
At4g31450.1 68417.m04469 zinc finger (C3HC4-type RING finger) fa... 27 8.4
At4g10560.1 68417.m01729 DC1 domain-containing protein contains ... 27 8.4
At3g53680.1 68416.m05928 PHD finger transcription factor, putati... 27 8.4
At3g43430.1 68416.m04597 zinc finger (C3HC4-type RING finger) fa... 27 8.4
At2g38823.1 68415.m04770 expressed protein 27 8.4
At2g37520.1 68415.m04601 PHD finger family protein contains Pfam... 27 8.4
At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative 27 8.4
At1g66040.1 68414.m07495 zinc finger (C3HC4-type RING finger) fa... 27 8.4
At1g57800.1 68414.m06558 zinc finger (C3HC4-type RING finger) fa... 27 8.4
>At2g19260.1 68415.m02248 ELM2 domain-containing protein / PHD
finger family protein contains Pfam profiles: PF01448
ELM2 domain, PF00628 PHD-finger
Length = 631
Score = 35.1 bits (77), Expect = 0.032
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 3 CAYCHRTLRHAESIKCCFCESKYHTKCMNETAKSICEGGDRGYQWKCAVC---QKSATKL 59
C +C + + + C CE YHT+C K + E +W C C Q S TK
Sbjct: 412 CKHCDKPGTVEKMLICDECEEAYHTRCCGVQMKDVAEID----EWLCPSCLKNQSSKTKT 467
Query: 60 SNEVQNSKE 68
+ + ++
Sbjct: 468 KGRISHERK 476
>At1g50620.1 68414.m05688 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 629
Score = 34.7 bits (76), Expect = 0.042
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 1 MVCAYCHRTLRHAESIKCC-FCESKYHTKCMNETAKSICEGGDRGYQWKCAVC 52
M C C T+ E++ C CE YH KC++ A +I +G + +W C+ C
Sbjct: 322 MTCQICQGTINEIETVLICDACEKGYHLKCLH--AHNI-KGVPKS-EWHCSRC 370
>At3g05130.1 68416.m00557 expressed protein ; expression supported
by MPSS
Length = 634
Score = 34.3 bits (75), Expect = 0.055
Identities = 38/189 (20%), Positives = 89/189 (47%), Gaps = 19/189 (10%)
Query: 20 FCESKYHTKCMNETAKSICEGGDRGYQWKCAVCQKSATKLSNEVQNSKEI--NIENTLNL 77
F ES++ C+ + E DR + + V + A +L+ +V+ KE + + +L
Sbjct: 121 FVESQFREMCVG-VDMLVKEKSDR--ESEIRVLKGEAIELTGKVEIEKEQLRKVCDERDL 177
Query: 78 LSEKFEL----VNKIQ--LPKLHNELAHVKLVTERIDKQNEQIL-------HEIDEIKTK 124
+ F+L VN+++ + +L + +++++V +++ +NE+++ EI+ +K +
Sbjct: 178 IKNGFDLQHEEVNRLKECVVRLEEKESNLEIVIGKLESENERLVKERKVREEEIEGVKKE 237
Query: 125 LNGIRTVKHNKHRYRNAHFEDRVSNRLDDNDHLQMVNNTEKSVRYRTRRRSYLLHNMLRL 184
G+ + K + + + L + + +++V +K V R+ L+ +R
Sbjct: 238 KIGLEKIMEEKKNEIDG-LKREIKVLLSEKNEMEIVKIEQKGVIEELERKLDKLNETVRS 296
Query: 185 LNSRNKVRR 193
L KV R
Sbjct: 297 LTKEEKVLR 305
>At2g27980.1 68415.m03391 expressed protein
Length = 1037
Score = 33.5 bits (73), Expect = 0.096
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 4 AYCHRTLRHAESIKCCFCESKYHTKCMNETAKSICEGGDRGYQ-WKCAV-CQKSATKLSN 61
++C I C CE ++H C+ E + I + + + W C++ C++ T L N
Sbjct: 759 SFCRLGFNARTVIICDQCEKEFHVGCLKE--RDIADLKELPEEKWFCSLGCEEINTTLGN 816
Query: 62 EVQNSKEINIENTLNLLSEK 81
+ +E N LN L +K
Sbjct: 817 LIVRGEEKLSNNILNFLRKK 836
>At3g20280.2 68416.m02570 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 482
Score = 31.5 bits (68), Expect = 0.39
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 1 MVCAYCHRTLRHAESIKCC-FCESKYHTKCMNETAKSICEGGDRGYQWKCAVC 52
M C C T+ +++ C CE YH KC+ G +W C+ C
Sbjct: 46 MACQICEVTINEMDTLLICDACEKAYHLKCLQGNNMK----GVPKSEWHCSRC 94
>At3g20280.1 68416.m02569 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 743
Score = 31.5 bits (68), Expect = 0.39
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 1 MVCAYCHRTLRHAESIKCC-FCESKYHTKCMNETAKSICEGGDRGYQWKCAVC 52
M C C T+ +++ C CE YH KC+ G +W C+ C
Sbjct: 307 MACQICEVTINEMDTLLICDACEKAYHLKCLQGNNMK----GVPKSEWHCSRC 355
>At3g22860.1 68416.m02882 eukaryotic translation initiation factor 3
subunit 8, putative / eIF3c, putative similar to
eukaryotic translation initiation factor 3 subunit 8
(eIF3 p110) [Arabidopsis thaliana] SWISS-PROT:O49160
Length = 800
Score = 31.1 bits (67), Expect = 0.51
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 5/110 (4%)
Query: 54 KSATKLSNEVQNSKEINIENTLNLLSEKFELVNKIQLPKLHNELAHVKLVTERIDKQNEQ 113
K +++N ++N K N L E FE +NK + ++K + D NE
Sbjct: 53 KRFEEMANTIENMKHAMNINDCVYLQETFEKLNKQISKSVKTPTLYIKTLVMLEDFLNED 112
Query: 114 ILHEIDEIKTK----LNGIR-TVKHNKHRYRNAHFEDRVSNRLDDNDHLQ 158
+ +++ T LN +R +K N +Y+ R S ++D+D +
Sbjct: 113 NMKTKEKMSTSNSKALNAMRQKLKKNNLQYQEDIKRFRESPEIEDDDEYE 162
>At3g02930.1 68416.m00288 expressed protein ; expression supported
by MPSS
Length = 806
Score = 31.1 bits (67), Expect = 0.51
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 48 KCAVCQKSATKLSNEVQNSKEINIENTLNLLSEKFELV------NKIQLPKLHNELAHVK 101
KCA + EV NS+ ++E+ + L EK EL+ K+ L K +L +
Sbjct: 330 KCASVSLVSVTKQLEVSNSRLHDMESEITDLKEKIELLEMTVASQKVDLEKSEQKLGIAE 389
Query: 102 LVTERIDKQNEQILHEIDEI 121
+ + +K+ E++ +E++ +
Sbjct: 390 EESSKSEKEAEKLKNELETV 409
>At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger)
family protein low similarity to nuclear protein np95
[Mus musculus] GI:4220590; contains Pfam profiles
PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
type (RING finger), PF00628: PHD-finger
Length = 642
Score = 31.1 bits (67), Expect = 0.51
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 2 VCAYCHRTLRHAESIKCCFCESKYHTKCMNETAKSICEGGDRGYQWKCAVC 52
VC C ES+ C C + +H C++ K++ QW C C
Sbjct: 14 VCMRCKSNPPPEESLTCGTCVTPWHVSCLSSPPKTLAS----TLQWHCPDC 60
>At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger)
family protein low similarity to nuclear protein np95
[Mus musculus] GI:4220590; contains Pfam profiles
PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
type (RING finger), PF00628: PHD-finger
Length = 645
Score = 31.1 bits (67), Expect = 0.51
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 2 VCAYCHRTLRHAESIKCCFCESKYHTKCMNETAKSICEGGDRGYQWKCAVC 52
VC C ES+ C C + +H C++ K++ QW C C
Sbjct: 14 VCMRCKSNPPPEESLTCGTCVTPWHVSCLSSPPKTLAS----TLQWHCPDC 60
>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
low similarity to nuclear matrix constituent protein 1
(NMCP1) [Daucus carota] GI:2190187
Length = 1042
Score = 30.7 bits (66), Expect = 0.68
Identities = 16/76 (21%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 58 KLSNEVQNSKEINIENTLNLLSEKFELVNKIQLPKLHNELAHVKLVTERIDKQNEQILHE 117
K + + +E I++ + ++ E V +++L +L E +KL ER +++ ++
Sbjct: 675 KAFEQEKKLEEERIQSLKEMAEKELEHV-QVELKRLDAERLEIKLDRERREREWAELKDS 733
Query: 118 IDEIKTKLNGIRTVKH 133
++E+K + + T +H
Sbjct: 734 VEELKVQREKLETQRH 749
>At3g18290.1 68416.m02326 zinc finger protein-related weak alignment
to Pfam profiles: PF00097 Zinc finger, C3HC4 type (RING
finger) (2 copies)
Length = 1254
Score = 30.7 bits (66), Expect = 0.68
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 8 RTLRHAESIKCCFCESKYHTKCMNETAKSICEGGDRGYQWKCAV--CQKSATKLSNEVQN 65
+TL + + + C + C + + KS C+ D+ + AV C+K T S EV N
Sbjct: 535 KTLSNIKEVNLQSCNACASVPCTSRSTKSCCQHQDKRPAKRTAVLSCEKKTTPHSTEVAN 594
>At1g77250.1 68414.m08997 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 522
Score = 30.7 bits (66), Expect = 0.68
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 2 VCAYCHRTLRHAESIKCCFCESKYHTKCMNETAKSICEGGDRGYQWKCAVCQKSATKL 59
+C C + + C C+ YH CM +S+ G +W C C+ + K+
Sbjct: 404 LCRNCLTDKDDDKIVLCDGCDDAYHIYCMRPPCESVPNG-----EWFCTACKAAILKV 456
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/51 (25%), Positives = 17/51 (33%), Gaps = 5/51 (9%)
Query: 2 VCAYCHRTLRHAESIKCCFCESKYHTKCMNETAKSICEGGDRGYQWKCAVC 52
+C C + + C CE YH C K G + W C C
Sbjct: 242 ICKLCGEKAEARDCLACDHCEDMYHVSCAQPGGK-----GMPTHSWYCLDC 287
>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
contains Pfam PF01422: NF-X1 type zinc finger; similar
to transcriptional repressor NF-X1 (SP:Q12986) [Homo
sapiens]; similar to EST gb|T21002
Length = 1188
Score = 30.7 bits (66), Expect = 0.68
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 3 CAYCHRTLRHAESI-KCCFCESKYHTKCMNETAKS-----ICEGGDRGYQWKCAVCQKSA 56
C C+ + + +I C C S +H C+ A++ + ++G W+C CQ
Sbjct: 223 CMICYDKVGRSANIWSCSSCYSIFHINCIKRWARAPTSVDLLAEKNQGDNWRCPGCQSVQ 282
Query: 57 TKLSNEV 63
S E+
Sbjct: 283 LTSSKEI 289
>At5g53020.1 68418.m06585 expressed protein
Length = 721
Score = 30.3 bits (65), Expect = 0.90
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 48 KCAVCQKSATKLSNEVQNSKEINIENTLNLLSEKFELVNKIQLPKLHNELAHVKLVTERI 107
KC + ++ K EVQ+ +E + SE + K +L + ++ R
Sbjct: 128 KCELLEERLVKAEKEVQDLRETQERDVQEHSSELWR--QKKTFLELASSQRQLEAELSRA 185
Query: 108 DKQNEQILHEIDEIKTKLNGIRTVKHNKHR 137
+KQ E HE++++ ++N +R K R
Sbjct: 186 NKQIEAKGHELEDLSLEINKMRKDLEQKDR 215
>At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG
binding domain-containing protein contains Pfam profiles
PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG
binding domain
Length = 2176
Score = 30.3 bits (65), Expect = 0.90
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 2 VCAYCHRTLRHAESIKCCFCESKYHTKCMNETAKSICEGGDRGYQWKCAVCQKSATKLSN 61
VC C + C C+++YHT C+N I +G W C C A +++
Sbjct: 1289 VCKVCGVDKDDDSVLLCDTCDAEYHTYCLNPPLIRIPDG-----NWYCPSC-VIAKRMAQ 1342
Query: 62 EVQNSKEI 69
E S ++
Sbjct: 1343 EALESYKL 1350
>At4g14700.1 68417.m02259 replication control protein, putative
similar to origin recognition complex subunit 1
(Replication control protein 1) [Homo sapiens]
SWISS-PROT:Q13415
Length = 809
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 3 CAYCHRTLRHAESIKCCFCESKYHTKCMNETAKSICEGGDRGYQWKCAVCQ 53
C C ++ + I+C C +H C+ K + EG W C C+
Sbjct: 166 CQICFKSHTNTIMIECDDCLGGFHLNCLKPPLKEVPEG-----DWICQFCE 211
>At3g49760.1 68416.m05440 bZIP transcription factor family protein
similar to bZIP transcription factor GI:1769891 from
[Arabidopsis thaliana]
Length = 156
Score = 29.9 bits (64), Expect = 1.2
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 53 QKSATKLSNEVQNSKEINIENTLNLLSEKFELVN-KIQLPKLHNELAHVKLVTERIDKQN 111
+K KLSN +++K + +L +L KIQ +L N+L +V +R +N
Sbjct: 72 RKKKRKLSNR-ESAKRSREKKQKHLEEMSIQLNQLKIQNQELKNQLRYVLYHCQRTKMEN 130
Query: 112 EQILHEIDEIKTKLNGIRTV 131
+++L E + KL IR V
Sbjct: 131 DRLLMEHRILHDKLLNIRQV 150
>At2g21830.1 68415.m02594 DC1 domain-containing protein contains
Pfam profilePF03107: DC1 domain
Length = 569
Score = 29.9 bits (64), Expect = 1.2
Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 2 VCAYCHRTLRHAESIKCCFCESKYHTKCMN 31
VC CH + +++ C CE+ YH +C++
Sbjct: 531 VCIICHERVL-GKAVSCMECETIYHLRCID 559
>At1g56040.1 68414.m06434 U-box domain-containing protein contains
Pfam profile PF04564: U-box domain
Length = 437
Score = 29.9 bits (64), Expect = 1.2
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 58 KLSNEVQNSKEINIENTLNLLSEKFELVNKIQLPKLHNELAHVKLVTERIDK--QNEQIL 115
KL E+++ KE E L + ++ E V KIQL + NE+ + +L E ++ + E IL
Sbjct: 196 KLEAELRHRKET--ETLLAIERDRIEKV-KIQLETVENEIDNTRLKAEEFERKYEGEMIL 252
Query: 116 HEIDEI 121
EI
Sbjct: 253 RRESEI 258
>At5g63730.1 68418.m07999 IBR domain-containing protein contains
similarity to Swiss-Prot:Q94981 ariadne-1 protein
(Ari-1) [Drosophila melanogaster] and Pfam:PF01485 IBR
domain
Length = 506
Score = 29.5 bits (63), Expect = 1.6
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 5 YCHRTLRHAESIKCCFCESKYHTKCMNETAKSICEGGDRGYQWKCAVCQKSATKLSNEVQ 64
+C R LR E+ K +S + C+ +CE DR W VCQK + ++++
Sbjct: 283 FCSRCLRSEEAHKIEAVDSGF---CIKTEVGILCE--DR---WN--VCQKLLEQAKSDLE 332
Query: 65 NSKEINIENTLNLLSEK 81
+E NI+ +LL E+
Sbjct: 333 AFEETNIKKPSDLLREQ 349
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385:
'chromo' (CHRromatin Organization MOdifier)
Length = 2228
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 18 CC-FCESKYHTKCMNETAKSICEGGDRGYQWKCAVCQKSATKL 59
CC C YHT C+N K I G +W C C ++ L
Sbjct: 75 CCDSCPRTYHTACLNPPLKRIPNG-----KWICPKCSPNSEAL 112
>At4g01720.1 68417.m00223 WRKY family transcription factor similar
to wild oat DNA-binding protein ABF2, GenBank accession
number Z48431
Length = 489
Score = 29.5 bits (63), Expect = 1.6
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 92 KLHNELAHVKLVTERIDKQNEQILHEIDEIKTKLNGIR 129
K +++ +KL ER+ ++N ++ H +DE+ N ++
Sbjct: 94 KTKTQISRLKLELERLHEENHKLKHLLDEVSESYNDLQ 131
>At3g08020.1 68416.m00979 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 764
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 2 VCAYCHRTLRHAESIKCCFCESKYHTKCMNETAKSICEG 40
VC C RT + + C C++ YH C + K++ G
Sbjct: 202 VCEVCRRTGDPNKFMFCKRCDAAYHCYCQHPPHKNVSSG 240
>At3g05670.1 68416.m00631 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 883
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 1 MVCAYCHRTLRHAESIKCCFCESKYHTKCMNETAKSICEGGDRGYQWKCAVCQKSA 56
++C CH+ + C C+S HT C+ + + EG W C C+ A
Sbjct: 504 IICTECHQGDDDGLMLLCDLCDSSAHTYCVG-LGREVPEG-----NWYCEGCRPVA 553
>At2g22430.1 68415.m02660 homeobox-leucine zipper protein 6 (HB-6) /
HD-ZIP transcription factor 6 identical to
homeobox-leucine zipper protein ATHB-6 (HD-ZIP protein
ATHB-6) (SP:P46668) [Arabidopsis thaliana]
Length = 311
Score = 29.5 bits (63), Expect = 1.6
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 105 ERIDKQNEQILHEIDEIKTKLNG 127
+ + + NE +L EI ++KTKLNG
Sbjct: 138 DSLRRDNESLLQEISKLKTKLNG 160
>At1g79630.2 68414.m09284 protein phosphatase 2C family protein /
PP2C family protein contains Pfam PF00481 : Protein
phosphatase 2C domain; similar to protein
phosphatase-2C GI:3643088 from [Mesembryanthemum
crystallinum]
Length = 394
Score = 29.5 bits (63), Expect = 1.6
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 41 GDRGYQWKCAVCQKSATKLSNEVQNSKEINIENTLNLLSEKFELVNKIQLPKLHNELAHV 100
G G+Q KC ++ T S +VQ ++ + + E VN +LP+++ L H
Sbjct: 31 GANGFQIKCTEEEEVQTTESEQVQKTESVTTMD--EQWCELNPNVNNDELPEMYLPLKHA 88
Query: 101 KLVT-ERIDKQ 110
L + ++IDK+
Sbjct: 89 MLKSCQQIDKE 99
>At1g79630.1 68414.m09285 protein phosphatase 2C family protein /
PP2C family protein contains Pfam PF00481 : Protein
phosphatase 2C domain; similar to protein
phosphatase-2C GI:3643088 from [Mesembryanthemum
crystallinum]
Length = 504
Score = 29.5 bits (63), Expect = 1.6
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 41 GDRGYQWKCAVCQKSATKLSNEVQNSKEINIENTLNLLSEKFELVNKIQLPKLHNELAHV 100
G G+Q KC ++ T S +VQ ++ + + E VN +LP+++ L H
Sbjct: 141 GANGFQIKCTEEEEVQTTESEQVQKTESVTTMD--EQWCELNPNVNNDELPEMYLPLKHA 198
Query: 101 KLVT-ERIDKQ 110
L + ++IDK+
Sbjct: 199 MLKSCQQIDKE 209
>At3g49140.1 68416.m05370 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1229
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/66 (22%), Positives = 33/66 (50%)
Query: 95 NELAHVKLVTERIDKQNEQILHEIDEIKTKLNGIRTVKHNKHRYRNAHFEDRVSNRLDDN 154
N + H LV +R Q+++I E+D + K+ + V ++ + ED+ ++ +
Sbjct: 555 NRIIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHS 614
Query: 155 DHLQMV 160
+ L +V
Sbjct: 615 EKLAIV 620
>At1g67230.1 68414.m07652 expressed protein
Length = 1132
Score = 29.1 bits (62), Expect = 2.1
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 102 LVTERIDKQNEQILHEIDEIKTKL-NGIRTVKHNKHRYRNAH---FEDRVSNRLDDNDHL 157
+++++ + + Q+LH+I+ K KL + ++T+ K R A FE+ L + ++L
Sbjct: 595 MLSKKAESERSQLLHDIEMRKRKLESDMQTILEEKERELQAKKKLFEEEREKELSNINYL 654
Query: 158 QMVNNTEKSVRYRTRRR 174
+ V E R+R
Sbjct: 655 RDVARREMMDMQNERQR 671
>At1g53190.1 68414.m06028 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHG1a
GI:3822225 from [Arabidopsis thaliana]; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 494
Score = 29.1 bits (62), Expect = 2.1
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 3 CAYCHRTLRHAESIKCCFCESKYHTKCMNE--TAKSIC 38
C C + ++ E I C +YH +C+ + K++C
Sbjct: 442 CTICQESFKNEEKIATLDCGHEYHAECLEKWLIVKNVC 479
>At3g52100.1 68416.m05717 PHD finger family protein contains Pfam
profile PF00628: PHD-finger
Length = 696
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 3 CAYCHRTLRHAES--IKCC-FCESKYHTKCMNETAKSICE-GGDRGYQWKCAVCQKSATK 58
C C + R +E+ + CC FC+ H +C + + + D Q+KC+ C+ + +
Sbjct: 299 CPVCLKVYRDSEATPMVCCDFCQRWVHCQCDGISDEKYMQFQVDGNLQYKCSTCRGESYQ 358
Query: 59 LSNEVQNSKEI 69
+ + +EI
Sbjct: 359 VKDLEDAVQEI 369
>At3g18524.1 68416.m02355 DNA mismatch repair protein MSH2 (MSH2)
identical to SP|O24617 DNA mismatch repair protein MSH2
(AtMsh2) {Arabidopsis thaliana}
Length = 937
Score = 28.7 bits (61), Expect = 2.7
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 13/113 (11%)
Query: 75 LNLLSEKFELVNKIQLPKLHNELAHVKLVTERIDKQNEQILHEIDEIKTKLNGIRTVKHN 134
LN++ K + L L N + + +Q L +++EIKT+L+ ++
Sbjct: 304 LNVMESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLVDLNEIKTRLDIVQC---- 359
Query: 135 KHRYRNAHFEDRVSNRLDDNDHLQMVNNTEKSVRYRTRRRSYLLHNMLRLLNS 187
F + R D HL+ +++ E+ +R RRR L H +++L S
Sbjct: 360 --------FVEEAGLRQDLRQHLKRISDVERLLRSLERRRGGLQH-IIKLYQS 403
>At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger)
family protein similar to C-terminal zinc-finger
[Glycine max] GI:558543; contains Pfam profile: PF00097
zinc finger, C3HC4 type (RING finger)
Length = 486
Score = 28.7 bits (61), Expect = 2.7
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 3 CAYCHRTLRHAESIKCCFCESKYHTKCMNE--TAKSIC 38
C C ++ + I C KYH +C+ + K++C
Sbjct: 428 CTICQENYKNEDKIATLDCMHKYHAECLKKWLVIKNVC 465
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 28.7 bits (61), Expect = 2.7
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 88 IQLPKLHNELAHVKLVTERIDKQNEQILHEIDEIKTKLNGIRTVKHNKHRYRNAHFEDRV 147
I+ +L+ + + KL+ E+ E+ HE++E L+ KH +N+ +
Sbjct: 1148 IENSELNAKWSEEKLMLEQQKNLAEKKYHELNEQNKLLHSRLEAKHLNSAEKNSR-SGTI 1206
Query: 148 SNRLDDNDHLQMVNNTEKSVRYRTRRR 174
S+ D+DHL+ + ++ V Y R +
Sbjct: 1207 SSGSTDSDHLE-DSGLQRVVHYLRRTK 1232
>At5g58610.1 68418.m07345 PHD finger transcription factor, putative
Length = 1065
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 16 IKCCFCESKYHTKCMNETAKSICEGGDR--GYQWKCAV-CQKS 55
I C CE KYH C+ C+ D+ G +W C+ C++S
Sbjct: 759 ISCKQCELKYHPSCLR--YDGACDSLDKILGEKWFCSKDCEES 799
>At5g24330.1 68418.m02867 PHD finger family protein / SET
domain-containing protein contains Pfam domain,
PF00628: PHD-finger and PF00856: SET domain
Length = 349
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 2 VCAYCHRTLRHAESIKCCFCESKYHTKCMNETAKSICEGGDRGYQWKCAVCQK 54
VC C + A+ + C C+ +H C+ S+ +G W C C K
Sbjct: 34 VCEECSSGKQPAKLLLCDKCDKGFHLFCLRPILVSVPKG-----SWFCPSCSK 81
>At3g07290.1 68416.m00868 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535: PPR repeat
Length = 880
Score = 28.3 bits (60), Expect = 3.6
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 20 FCESKYHTKCMNETAKSICEGGDRGYQWKCAVCQKSATKLSNEVQNSKEINIE-NTLNLL 78
+C K HTKCM + G ++ C V Q K + + ++E+ +E T N +
Sbjct: 783 YCSKKKHTKCMELITLVLKSGFVPSFKSFCLVIQ--GLKKEGDAERARELVMELLTSNGV 840
Query: 79 SEKFELVNKIQLPKLHNELAHVKLVTERIDK 109
EK ++ ++ +E V + +D+
Sbjct: 841 VEKSGVLTYVECLMEGDETGDCSEVIDLVDQ 871
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 105 ERIDKQNEQILHEIDEIKTKLNGIRTVKHNK 135
E+I+ Q + I ++DE + K++GI V N+
Sbjct: 198 EKINDQEDSIKQDVDEEQNKISGIEKVVENQ 228
>At2g41470.1 68415.m05123 embryo-specific protein-related similar to
embryo-specific protein 3 (ATS3) [Arabidopsis thaliana]
GI:3335171
Length = 365
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 135 KHRYRNAHFEDRVSNRLDDNDHLQMVNNTEKSVRYRTRRRSYLLHNM 181
KH Y + F + ++NR ++ D +Q++ ++ +R + R +L+ M
Sbjct: 209 KHIYSHIGFIEELANRFEEED-VQLLRVLQQQLREKVERLRFLIKRM 254
>At2g14390.1 68415.m01608 hypothetical protein
Length = 262
Score = 28.3 bits (60), Expect = 3.6
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 50 AVCQKSATKLSNEVQNSKEINIENTLNLLSE--KFELVNKIQLPKLHNELAHVKLVTERI 107
A CQ+ A K N + + K + N L+ ++ K+E K + K+ N KL+TE I
Sbjct: 152 ADCQREAGK--NHMSDFKVL-FSNDLSSAAQIKKYEDKAKATMVKIKNLEDSYKLLTETI 208
Query: 108 DKQNEQILHEIDEIKTKLNGIRT 130
+ ++ L+ + IK+KL T
Sbjct: 209 HIKFDKSLNLLHGIKSKLGSTET 231
>At5g59210.1 68418.m07420 myosin heavy chain-related contains weak
similarity to Myosin heavy chain, gizzard smooth muscle
(Swiss-Prot:P10587) [Gallus gallus]
Length = 434
Score = 27.9 bits (59), Expect = 4.8
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 85 VNKIQLPKLHNELAHVKLVTERIDKQNEQILHEIDEIKTKLNGIRTVKHNKHRYRNAHFE 144
V+ QLP L E+A++KL ++ +Q H + E +T++ + + K + + +
Sbjct: 186 VSPDQLPILEKEMANLKLELQKESVLRQQEQHRLAEEQTRVASLMSEKQELEQ-KISVLS 244
Query: 145 DRVSNRLDDNDHLQMVNNTEK 165
R S + + V + EK
Sbjct: 245 SRASEVSESGQKVFSVEDKEK 265
>At5g56180.2 68418.m07009 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 387
Score = 27.9 bits (59), Expect = 4.8
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 49 CAVCQKSATKLSNEVQNSKEINIENTLNLLSEKFELVNKIQLPKLHNELAHVKLVTE 105
C V +LS + Q S E++ E L E+F+ + P+L + H KLV E
Sbjct: 317 CYVALDYKAELSKDTQASVEVSGEGWFTLSKERFQTGEILFQPRLAGIIVH-KLVYE 372
>At5g53430.1 68418.m06640 PHD finger family protein / SET
domain-containing protein (TX5) contains Pfam domain,
PF00628: PHD-finger and PF00856: SET domain; identical
to cDNA trithorax 5 (TX5) partial cds GI:16118406
Length = 1043
Score = 27.9 bits (59), Expect = 4.8
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 2 VCAYCHRTLRHAESIKCCFCESKYHTKC 29
+C C + H +CC C + YH C
Sbjct: 720 ICVICKQI--HGSCTQCCKCSTYYHAMC 745
>At5g40990.1 68418.m04983 GDSL-motif lipase/hydrolase family protein
similar to lipase [Arabidopsis thaliana] GI:1145627;
contains Pfam profile PF00657: Lipase/Acylhydrolase with
GDSL-like motif
Length = 374
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 103 VTERIDKQNEQILHEIDEIKTKLNGIRTVKHNKHRYRNAHFED 145
VTE I+ NE++L+ + + +L+G + H+ H + D
Sbjct: 248 VTELINMHNEKLLNGLRRLNHELSGFKYALHDYHTSLSERMND 290
>At4g40060.1 68417.m05672 homeobox-leucine zipper protein 16 (HB-16)
/ HD-ZIP transcription factor 16 identical to
homeodomain leucine-zipper protein ATHB-16 (GP:5668909|)
{Arabidopsis thaliana}
Length = 294
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 105 ERIDKQNEQILHEIDEIKTKLNGIRTVKHNK 135
+ + + N+ +L EI +IK K+NG +NK
Sbjct: 135 DSLRRDNDSLLQEISKIKAKVNGEEDNNNNK 165
>At4g27910.1 68417.m04006 PHD finger protein-related / SET
domain-containing protein (TX4) nearly identical over
285 amino acids to trithorax 4 [Arabidopsis thaliana]
GI:16118405; contains Pfam profiles PF00856: SET domain,
PF00855: PWWP domain; identical to cDNA trithorax 4
(TX4) partial cds GI:16118404
Length = 1027
Score = 27.9 bits (59), Expect = 4.8
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 2 VCAYCHRTLRHAESIKCCFCESKYHTKC 29
+C C + H +CC C + YH C
Sbjct: 705 ICVICKQI--HGSCTQCCKCSTYYHAMC 730
>At4g17850.1 68417.m02662 hypothetical protein
Length = 187
Score = 27.9 bits (59), Expect = 4.8
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 7/71 (9%)
Query: 18 CCFCE-SKYHTKCMNETAKSICEGGDRGYQWKCAVCQKSATKLSNEVQNSKEINIENTLN 76
CC C HT CM E + + W C C K ++ E N + + + +
Sbjct: 55 CCNCGVGAEHTYCMMEKIDKVPDS------WSCYDCTKEVDEMREEKGNEETSSRKRKAD 108
Query: 77 LLSEKFELVNK 87
++ FE K
Sbjct: 109 AVTNFFETAEK 119
>At4g12620.1 68417.m01988 replication control protein, putative
similar to origin recognition complex subunit 1
(Replication control protein 1)[Homo sapiens]
SWISS-PROT:Q13415
Length = 813
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 3 CAYCHRTLRHAESIKCCFCESKYHTKCMNETAKSICEGGDRGYQWKCAVCQ 53
C C ++ + I+C C +H KC+ K + EG W C C+
Sbjct: 169 CQICFKSDTNI-MIECDDCLGGFHLKCLKPPLKEVPEG-----DWICQFCE 213
>At3g12580.1 68416.m01567 heat shock protein 70, putative / HSP70,
putative strong similarity to heat shock protein
GI:425194 [Spinacia oleracea]
Length = 650
Score = 27.9 bits (59), Expect = 4.8
Identities = 17/102 (16%), Positives = 53/102 (51%)
Query: 68 EINIENTLNLLSEKFELVNKIQLPKLHNELAHVKLVTERIDKQNEQILHEIDEIKTKLNG 127
+I+ LN+ +E K ++ +++ K E++ ++ E+ E +E K K++
Sbjct: 485 DIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEEHKKKVDA 544
Query: 128 IRTVKHNKHRYRNAHFEDRVSNRLDDNDHLQMVNNTEKSVRY 169
+++ + RN +++++++LD D ++ + ++++ +
Sbjct: 545 KNALENYAYNMRNTIKDEKIASKLDAADKKKIEDAIDQAIEW 586
>At1g05380.1 68414.m00546 PHD finger transcription factor, putative
Length = 600
Score = 27.9 bits (59), Expect = 4.8
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 16 IKCCFCESKYHTKCMNETAKSI 37
+ C CE +YH C+N+ A +
Sbjct: 151 LSCGMCERRYHQLCLNDEAHKV 172
>At5g59210.2 68418.m07421 myosin heavy chain-related contains weak
similarity to Myosin heavy chain, gizzard smooth muscle
(Swiss-Prot:P10587) [Gallus gallus]
Length = 433
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 85 VNKIQLPKLHNELAHVKLVTERIDKQNEQILHEIDEIKTKLNGIRTVK 132
V+ QLP L E+A++KL ++ +Q H + E +T++ + + K
Sbjct: 186 VSPDQLPILEKEMANLKLELQKESVLRQQEQHRLAEEQTRVASLMSEK 233
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/71 (21%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 56 ATKLSNEVQNSKEINIENTLNLLSEKFELVNKIQ-LPKLHNELAHVKLVTERIDKQNEQI 114
A+ +S + + ++I++ ++ +SE + V ++ KL +L + + ER++ +++
Sbjct: 227 ASLMSEKQELEQKISVLSSRASVSESGQKVFSVEDKEKLEKQLHDMAVALERLESSRQKL 286
Query: 115 LHEIDEIKTKL 125
L EID +++
Sbjct: 287 LMEIDNQSSEI 297
>At5g41620.1 68418.m05057 expressed protein weak similarity to
microtubule binding protein D-CLIP-190 (GI:2773363)
[Drosophila melanogaster]; weak similarity to
Synaptonemal complex protein 1 (SCP-1 protein)
(Swiss-Prot:Q15431) [Homo sapiens]; weak similarity to
DNA double-strand break repair rad50 ATPase.
(Swiss-Prot:P58301) [Pyrococcus furiosus]
Length = 543
Score = 27.5 bits (58), Expect = 6.3
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 85 VNKIQLPK-LHNELAHVKLVTERIDKQNEQILHEIDEIKTKLNGIRTVKHNKHRYRNAHF 143
V+ I L K L E+AH ++ + + + + HE+D + +L + + NK R +
Sbjct: 134 VSNISLIKALKTEVAHSRVRIKELLRYQQADRHELDSVVKQLAEEKLLSKNKEVERMSSA 193
Query: 144 EDRVSNRLDDNDHLQ 158
V L+D L+
Sbjct: 194 VQSVRKALEDERKLR 208
>At5g22760.1 68418.m02658 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1566
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 3 CAYCHRTLRHAESIKCCFCESKYHTKCMNETAKSICEGGDRGYQWKCAVCQK 54
C C + + + C C H+ C +S C GG W+C C++
Sbjct: 1518 CQIC-KHVEPGPDLTCQTCNMTIHSHCSPWEEESTCIGG----SWRCGRCRE 1564
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 3 CAYCHRTLRHAESIKCCFCESKYHTKC 29
CA CH + +SI C C+ H +C
Sbjct: 1085 CASCHLDVFLRDSITCSTCQGFCHKEC 1111
>At4g10370.1 68417.m01702 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 687
Score = 27.5 bits (58), Expect = 6.3
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 3 CAYCHRTLRHAESIKCCFCESKYHTKCM 30
C C ++ A C CE K+H +C+
Sbjct: 132 CGGCRDSMLSASYYACLQCEKKFHKECV 159
>At3g59710.1 68416.m06662 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198 short
chain dehydrogenase/reductase SDR family
Length = 302
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 67 KEINIENTLNLLSEKFELVNKIQLPKLHNELAHVKLVTERIDKQNEQILHEI 118
+ +++ LN+ S + +NK++ P + L L E+ID Q L ++
Sbjct: 153 RSVSVSRILNM-SSRLGTLNKLRSPSIRRILESEDLTNEQIDATLTQFLQDV 203
>At2g38580.1 68415.m04739 expressed protein ; expression supported
by MPSS
Length = 377
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/54 (20%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 83 ELVNKIQLPKLHNELAHVKLVTERIDKQNEQILHEIDEIKTKLNGIRTVKHNKH 136
E ++ + L+NE+A ++ ++K +L + +K ++ ++ V+H H
Sbjct: 165 EKSSREMISSLNNEIARLRAQVTELEKSKSNLLEQNQSLKETISNLQ-VQHENH 217
>At2g26320.1 68415.m03158 MADS-box protein (AGL33) contains Pfam
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain)
Length = 109
Score = 27.5 bits (58), Expect = 6.3
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 107 IDKQNEQILHE-IDEIKTKLNGIRTVKHNKHRY---RNAHFE--DRVSNRLDDNDHLQMV 160
I +N+QI+ E + K KL I ++K ++ + F+ + V+ D + L +V
Sbjct: 5 IKNKNKQIVKENMGRKKLKLKRIESLKERSSKFSKRKKGLFKKAEEVALLCDSDIMLIVV 64
Query: 161 NNTEKSVRYRTRRRSY 176
+ TEK + TR RS+
Sbjct: 65 SPTEKPTVFNTRSRSF 80
>At1g77800.1 68414.m09059 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1423
Score = 27.5 bits (58), Expect = 6.3
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 1 MVCAYCHRTLRHAESIKCCFCESKYHTKCMNETAKSICEGGDRGYQWKCAVCQKSATKLS 60
++C +C H + I C C++ H KC + E D G W C+ C+ +
Sbjct: 283 LLCDFC--CTGHHQLIVCTSCKATVHKKCY-----GLLE--DSGKPWLCSWCELENGRAD 333
Query: 61 NE 62
+E
Sbjct: 334 SE 335
>At5g66160.2 68418.m08334 protease-associated zinc finger
(C3HC4-type RING finger) family protein contains Pfam
domain, PF02225: protease-associated (PA) domain and
Pfam domain, PF00097: Zinc finger, C3HC4 type (RING
finger); similar to ReMembR-H2 protein JR702
[Arabidopsis thaliana] gi|6942149|gb|AAF32326; identical
to cDNA ReMembR-H2 protein JR700 mRNA, complete cds
GI:6942146
Length = 290
Score = 27.1 bits (57), Expect = 8.4
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 3 CAYCHRTLRHAESIKCCFCESKYHTKCMN 31
CA C R ES++ C+ +H C++
Sbjct: 232 CAICLEDYRFGESLRLLPCQHAFHLNCID 260
>At5g66160.1 68418.m08335 protease-associated zinc finger
(C3HC4-type RING finger) family protein contains Pfam
domain, PF02225: protease-associated (PA) domain and
Pfam domain, PF00097: Zinc finger, C3HC4 type (RING
finger); similar to ReMembR-H2 protein JR702
[Arabidopsis thaliana] gi|6942149|gb|AAF32326; identical
to cDNA ReMembR-H2 protein JR700 mRNA, complete cds
GI:6942146
Length = 310
Score = 27.1 bits (57), Expect = 8.4
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 3 CAYCHRTLRHAESIKCCFCESKYHTKCMN 31
CA C R ES++ C+ +H C++
Sbjct: 232 CAICLEDYRFGESLRLLPCQHAFHLNCID 260
>At5g55970.2 68418.m06981 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 343
Score = 27.1 bits (57), Expect = 8.4
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 3 CAYCHRTLRHAESIKCCFCESKYHTKCMNETAKSI 37
C C + E ++ C K+H+KC+++ + I
Sbjct: 297 CCICLAKYKDKEEVRKLPCSHKFHSKCVDQWLRII 331
>At5g55970.1 68418.m06980 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 343
Score = 27.1 bits (57), Expect = 8.4
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 3 CAYCHRTLRHAESIKCCFCESKYHTKCMNETAKSI 37
C C + E ++ C K+H+KC+++ + I
Sbjct: 297 CCICLAKYKDKEEVRKLPCSHKFHSKCVDQWLRII 331
>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
identical to CIP1 (GI:836950) [Arabidopsis thaliana]
Length = 1305
Score = 27.1 bits (57), Expect = 8.4
Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 12/127 (9%)
Query: 7 HRTLRHAESIKCCFCESKYHTKCMNETAKS-------ICEGGDRGYQWKCAVCQK-SATK 58
HR L +ES+K ES+ + ++ET+ + E + K + +K S
Sbjct: 675 HRVLELSESLKAAEEESRTMSTKISETSDELERTQIMVQELTADSSKLKEQLAEKESKLF 734
Query: 59 LSNEVQNSKEINI---ENTLNLLSEKFELVNKIQLPKLHNELAHVKLVTERIDKQNEQIL 115
L E + ++ I E T+ L + E V + ++ L E+A V E+++ QN +++
Sbjct: 735 LLTEKDSKSQVQIKELEATVATLELELESV-RARIIDLETEIASKTTVVEQLEAQNREMV 793
Query: 116 HEIDEIK 122
I E++
Sbjct: 794 ARISELE 800
>At5g12400.1 68418.m01458 PHD finger transcription factor, putative
similarity to predicted proteins, Arabidopsis thaliana
Length = 1595
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 15 SIKCCF-CESKYHTKCMNETAKSICEGGDRGYQWKCAVC 52
S+ CC C + YH+KC+ + + EG W C C
Sbjct: 619 SLLCCDGCPAAYHSKCVGLASHLLPEG-----DWYCPEC 652
>At4g31450.1 68417.m04469 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 497
Score = 27.1 bits (57), Expect = 8.4
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 3 CAYCHRTLRHAESIKCCFCESKYHTKCMNE 32
C+ C + + CE YH KC+ E
Sbjct: 448 CSICQEEYTIGDEVGRLHCEHTYHVKCVQE 477
>At4g10560.1 68417.m01729 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 703
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 98 AHVKLVTER-------IDKQNEQILHEIDEIKTKLNGIRTVKHNKHRYRNAHFEDRVSNR 150
AH K T+R ++ + E+ + E++ +GI ++H H++ + +D ++
Sbjct: 372 AHSKCATQRNVWDGKELEGEQEEEIKEVEPFVKISDGI--IQHFSHQHHHLRLDDNINRD 429
Query: 151 LDDNDHLQ 158
D+N Q
Sbjct: 430 YDENKECQ 437
>At3g53680.1 68416.m05928 PHD finger transcription factor, putative
predicted proteins, Arabidopsis thaliana
Length = 839
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/67 (22%), Positives = 27/67 (40%)
Query: 16 IKCCFCESKYHTKCMNETAKSICEGGDRGYQWKCAVCQKSATKLSNEVQNSKEINIENTL 75
I C CE +YH C+ E +G + + C+ C + L + + L
Sbjct: 583 ILCDQCEKEYHVGCLRENELCDLKGIPQDKWFCCSDCSRIHRVLQSSASCGPQTIPTLLL 642
Query: 76 NLLSEKF 82
+ +S K+
Sbjct: 643 DTISRKY 649
>At3g43430.1 68416.m04597 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 167
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 2 VCAYCHRTLRHAESIK-CCFCESKYHTKCMNETAKSICEGGDRGYQWKCAVCQ 53
+CA C L + I+ C +H C++ C GGD C +C+
Sbjct: 82 MCAVCLGDLEDEDEIRELRNCTHVFHRDCIDRWLDYECCGGDDDNHRTCPLCR 134
>At2g38823.1 68415.m04770 expressed protein
Length = 258
Score = 27.1 bits (57), Expect = 8.4
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 89 QLPKLHNELAHVKLVTERIDKQNEQILHEIDEIKTKLNGIRTVKHNKHRYRNAHFEDRVS 148
+L K E HVK T+ K EQ + +++ K +L G+R + K + DR
Sbjct: 183 ELQKDWEEKQHVKQYTKNKYKDLEQKVKHLEKKKEQLAGLRD-EERKIMFGTKKTHDRKI 241
Query: 149 NRLDDNDHLQMVNN 162
+ +++M+N+
Sbjct: 242 GTYPEAYYIKMLND 255
>At2g37520.1 68415.m04601 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 854
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 16 IKCCFCESKYHTKCMNETAKSICEGGDRGYQWKCAVCQKSATKLSNEV 63
I C CE +YH C+ E + + + C+ C + T + N V
Sbjct: 594 ILCDQCEKEYHVGCLRENGFCDLKEIPQEKWFCCSNCSRIHTAVQNSV 641
>At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative
Length = 746
Score = 27.1 bits (57), Expect = 8.4
Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 2/99 (2%)
Query: 1 MVCAYCHRTLRHAESIKCCFCESKYHTKCMNETAKSICEGGDRGYQWKCAVCQKSATKLS 60
+ C+ C ++ C CE YH C+ + + I G A+ KS +K +
Sbjct: 536 ITCSICDEKFC-GKAFSCVTCEDIYHPMCI-QVGRRILVGHPLHVDHMLAISLKSGSKCT 593
Query: 61 NEVQNSKEINIENTLNLLSEKFELVNKIQLPKLHNELAH 99
N + T+ ++ E + + +P+ +H
Sbjct: 594 ACQLNITKYGYHCTICEINFHIECIKAVIVPRKIKSHSH 632
>At1g66040.1 68414.m07495 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 622
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 2 VCAYCHRTLRHAESIKCCFCESKYHTKCMNETAKSICEGGDRGYQWKCAVC 52
VC C T E++ C C + +H C+ + + G W+C C
Sbjct: 14 VCMRCQVTPPSEETLTCGTCVTPWHVSCLLPESLASSTG-----DWECPDC 59
>At1g57800.1 68414.m06558 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 660
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 2 VCAYCHRTLRHAESIKCCFCESKYHTKCMNETAKSICEGGDRGYQWKCAVCQKSATKL 59
VC C ES+ C C + +H C+ +++ QW C C L
Sbjct: 14 VCMRCKSMPPPEESLTCGTCVTPWHVSCLLSPPETL----SATLQWLCPDCSGETNPL 67
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.320 0.131 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,392,701
Number of Sequences: 28952
Number of extensions: 167773
Number of successful extensions: 897
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 853
Number of HSP's gapped (non-prelim): 92
length of query: 195
length of database: 12,070,560
effective HSP length: 77
effective length of query: 118
effective length of database: 9,841,256
effective search space: 1161268208
effective search space used: 1161268208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)
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