GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000701-TA|BGIBMGA000701-PA|IPR011614|Catalase,
N-terminal, IPR002226|Catalase
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...   499   e-142
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    28   2.7  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    27   4.6  
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    27   8.1  
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    27   8.1  

>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score =  499 bits (1230), Expect = e-142
 Identities = 237/472 (50%), Positives = 320/472 (67%), Gaps = 7/472 (1%)

Query: 26  TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEV 85
           TT +G P+    A   VGK GP LLQD + +D    FDRERIPERVVHAKG+GAFG FE 
Sbjct: 13  TTNTGCPIFNPMAAARVGKGGPVLLQDSHLIDVFQHFDRERIPERVVHAKGSGAFGEFEC 72

Query: 86  THDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDLVG 145
           T DITKY+   +F  +GK+TP+  RFSTVGGE G+ DT RDPRGFA+KFYTD+G++D+VG
Sbjct: 73  TDDITKYTKHTMFSKVGKKTPMVARFSTVGGERGTPDTARDPRGFALKFYTDEGIFDMVG 132

Query: 146 NNTPIFFIRDPTLFPSFIHTQKRNPATHLKDPDMFWDFLTLRPETIHQLLYLFGD-RGIP 204
           NNTP+FF+RDP  FP FIHTQKRNP   +KD  MFWD+L+   E+IHQ++ LF D  G P
Sbjct: 133 NNTPVFFLRDPAKFPLFIHTQKRNPQNDMKDATMFWDYLSQNAESIHQVMILFSDLGGTP 192

Query: 205 DGYRHMNGYGSHTFKLVNSQGVGYWVKFHYKTNQGIKNLSVDKAGELASTDPDYSIRDLY 264
             YR M+G+ SHT+K VN +G  Y+ K+H+ TNQG K L+ ++A  L  ++PD++ +DL+
Sbjct: 193 YSYRFMDGFSSHTYKFVNDKGEFYYCKWHFITNQGTKGLTNEEAAALDGSNPDHARQDLF 252

Query: 265 NSIAKGDYPSWTFYIQVMTMAQAESCKFNPFDLTKIWPHAEYPLIPVGKLVLDRNPKNYF 324
            +I +GDYPSWT Y+QVMT  +AE  ++N FDLTK+WPH + P+  VG+  L++NP N+F
Sbjct: 253 EAIERGDYPSWTLYVQVMTPQEAEKYRYNIFDLTKVWPHKDVPMQRVGRFTLNQNPTNFF 312

Query: 325 AEVEQIAFSPSNLVPGIEPSPDKMLQGRLFAYSDTHRHRLGANYLQIPVNCPYKVAVSTY 384
           A++EQ  FSPS++VPGIE S D +LQ R F+Y DTHRHRLGAN+ QIPVN P K  V  Y
Sbjct: 313 ADIEQAGFSPSHMVPGIEVSADPVLQVRTFSYPDTHRHRLGANFEQIPVNSP-KCPVFNY 371

Query: 385 QRDGPQAIH-NQDDCPNYFPNSFSGPQECPRAQRLQPRYNVGGDVDRYDSGQTEDNFSQA 443
            RDGP  ++ NQ + PNY P+S   P    + +  +      G V  +    T+ +F Q 
Sbjct: 372 SRDGPMNVNGNQGNWPNY-PSSIR-PLAKVQYEPDEGHEKWVGQVTYHMDEITDVDFEQP 429

Query: 444 TALYKQVFDDAAKQR--AIANIVDHLKDAAAFIQERAIKIFSQVHPELGNKV 493
            A ++ V      Q+   + N+  HL  A + ++ER   +F++V  ELG ++
Sbjct: 430 RAFWQNVLGKKPGQQDNFVKNVAGHLSGAISPVRERQYGVFTRVDSELGRRI 481


>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 152 FIRDPTLFPSFIHTQKRNPATHLKDP 177
           +++DPTL P F+HT  R   T   +P
Sbjct: 506 WVKDPTLTPKFLHTSYRAVQTDNDNP 531


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 200 DRGIPDGYRHMNGYGSHTFKLVNSQGVGYWVKFHYKTNQGIKNLSVDKAGELASTDPDYS 259
           D GI    + +N  G H  + V +     W    Y +  G++ + +DK  ++ S +P+Y 
Sbjct: 18  DYGIIGACQLLNPSGYHRAEKVENNE---WTFARYDSYTGVELVDLDKRWDILSLNPNYK 74

Query: 260 IRDL 263
           +  L
Sbjct: 75  LPKL 78


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 152 FIRDPTLFPSFIHTQKRNPATHLKDPDMFWDFLTLRPETIHQ-LLYLFGDRG 202
           F  +P  +   +H    N    L     FW F +++PE  H+ +L+L G  G
Sbjct: 34  FPNEPVDYEGRMHAGHLNQTDQLDGDLFFWMFESVKPEYEHRSILWLNGGPG 85


>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 49  LLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFESIGKRTP 106
           L+ D +  D  SS+  + IP ++   K       F+ THD  KY+      +I  R P
Sbjct: 230 LMLDSDAQDLYSSYSHDLIPSQIEAGKNGANPDVFDDTHD--KYTDNLSARAISPRAP 285


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.137    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,543,990
Number of Sequences: 5004
Number of extensions: 117586
Number of successful extensions: 243
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 238
Number of HSP's gapped (non-prelim): 5
length of query: 507
length of database: 2,362,478
effective HSP length: 76
effective length of query: 431
effective length of database: 1,982,174
effective search space: 854316994
effective search space used: 854316994
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)