GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000701-TA|BGIBMGA000701-PA|IPR011614|Catalase,
N-terminal, IPR002226|Catalase
         (507 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16867| Best HMM Match : No HMM Matches (HMM E-Value=.)              99   1e-20
SB_24119| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   8e-11
SB_23885| Best HMM Match : Peptidase_S10 (HMM E-Value=0)               35   0.18 
SB_6116| Best HMM Match : Patched (HMM E-Value=0.025)                  30   3.8  
SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)                   30   3.8  
SB_33948| Best HMM Match : rve (HMM E-Value=2.8e-29)                   30   5.1  
SB_33292| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.7  
SB_24688| Best HMM Match : F5_F8_type_C (HMM E-Value=4.6e-14)          29   6.7  
SB_20470| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.7  
SB_36917| Best HMM Match : RinB (HMM E-Value=2.2)                      29   8.8  
SB_22561| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   8.8  

>SB_16867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 51

 Score = 98.7 bits (235), Expect = 1e-20
 Identities = 41/51 (80%), Positives = 49/51 (96%)

Query: 300 IWPHAEYPLIPVGKLVLDRNPKNYFAEVEQIAFSPSNLVPGIEPSPDKMLQ 350
           IWPHAE+PLIPVGK+VL+RNPKNYFAE+EQ AF+P+++VPGIE SPDKMLQ
Sbjct: 1   IWPHAEFPLIPVGKMVLNRNPKNYFAEIEQSAFNPASMVPGIEASPDKMLQ 51


>SB_24119| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 65.7 bits (153), Expect = 8e-11
 Identities = 38/103 (36%), Positives = 56/103 (54%), Gaps = 20/103 (19%)

Query: 399 PNYFPNSFSGPQECPRAQRLQPRYNVGGDVDRYDSGQTEDNFSQATALYKQVFDDAAKQR 458
           PNYFPNSFSGP +               DV +Y   Q    F+  T  + +V +D  + R
Sbjct: 4   PNYFPNSFSGPMD---------------DVAKYSPSQ----FT-VTTFWTKVLNDEERMR 43

Query: 459 AIANIVDHLKDAAAFIQERAIKIFSQVHPELGNKVAAGLAPYK 501
            + NI  H+KDA  FIQ+R ++ F++VHP+ GN +A  L  ++
Sbjct: 44  LVKNIAGHVKDAKDFIQKRCVQQFTKVHPDFGNGIARELQKHQ 86


>SB_23885| Best HMM Match : Peptidase_S10 (HMM E-Value=0)
          Length = 446

 Score = 34.7 bits (76), Expect = 0.18
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 158 LFPSFIHTQKRNPATHLKDPDMFWDFLTLRPETIHQLLYLFGDRGIP 204
           +F  F   + ++       PD  WD++T+RP + H   +L+G RG P
Sbjct: 12  VFTIFFFKESQSAVPRTSIPDEKWDYVTVRP-SAHMFWWLYGARGEP 57


>SB_6116| Best HMM Match : Patched (HMM E-Value=0.025)
          Length = 831

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 14/50 (28%), Positives = 22/50 (44%)

Query: 264 YNSIAKGDYPSWTFYIQVMTMAQAESCKFNPFDLTKIWPHAEYPLIPVGK 313
           Y S+   DYP   F++ +  +     C F P      +P    P++PV K
Sbjct: 78  YYSVLVADYPFVVFFVTLAVIIVCALCDFVPLFGAPDFPDFSTPVMPVSK 127


>SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)
          Length = 364

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 37  TAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEVTHDITKYSAAK 96
           T + T  ++GP         + + S  R+R+ E    + G G + Y     +IT+YS ++
Sbjct: 177 TQVSTTRRSGPDGKTTTTTREVVDSGGRQRVTESTRTSPGIGRYDYTSARRNITEYSPSQ 236


>SB_33948| Best HMM Match : rve (HMM E-Value=2.8e-29)
          Length = 361

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 15/40 (37%), Positives = 20/40 (50%)

Query: 173 HLKDPDMFWDFLTLRPETIHQLLYLFGDRGIPDGYRHMNG 212
           H K P++F    T  P+TI  L  LF   G+P+     NG
Sbjct: 201 HSKWPEIFATSSTTAPKTIEMLAGLFASHGLPEEMVSDNG 240


>SB_33292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 16/46 (34%), Positives = 21/46 (45%)

Query: 272 YPSWTFYIQVMTMAQAESCKFNPFDLTKIWPHAEYPLIPVGKLVLD 317
           Y   T Y +   + Q  +  F    L  IW  A+ PL+P  K VLD
Sbjct: 490 YHGPTDYTKAQPITQILNASFKDQRLPPIWKMADVPLLPKTKPVLD 535


>SB_24688| Best HMM Match : F5_F8_type_C (HMM E-Value=4.6e-14)
          Length = 226

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 104 RTPIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDLVGNNTPIFFIRDPTLFPSFI 163
           R  + + F+  G   G+A  V   + F V    DD VW  V N T       P LFP  +
Sbjct: 132 RDKVIIAFAMQG--YGNAHAVERTKRFWVSTSHDDEVWTFVKNTTS----GSPKLFPGNV 185

Query: 164 HT 165
           H+
Sbjct: 186 HS 187


>SB_20470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 401

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 6/86 (6%)

Query: 42  VGKNGPALLQDVNFLDEMSSFDRERIPERVVH------AKGAGAFGYFEVTHDITKYSAA 95
           +  N   LLQ + F  +M  F  ++   R +H      +KG     YF    DI   + +
Sbjct: 258 ITSNAMGLLQSLTFFTQMRFFCHKQAVGRTLHILTTPDSKGKAVVDYFSAKTDILPSACS 317

Query: 96  KVFESIGKRTPIAVRFSTVGGESGSA 121
              E  G    +  R    G +S  A
Sbjct: 318 SFTEGAGNNALLTGRCHRWGRDSSGA 343


>SB_36917| Best HMM Match : RinB (HMM E-Value=2.2)
          Length = 522

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 9/67 (13%)

Query: 381 VSTYQRDGPQAIHNQDDCPNYFPNSF--SGPQECPRAQRLQPRYNVGGDVDRYDSGQTED 438
           +S+Y+RD P A+  Q     + P S   S PQE      L  ++  G   ++Y  GQTE 
Sbjct: 138 ISSYKRDSPLAL--QPSLGEFEPASLNSSWPQEF-----LNRKFFTGSQFEKYTIGQTEV 190

Query: 439 NFSQATA 445
           N +   A
Sbjct: 191 NNNDTRA 197


>SB_22561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 432 DSGQTEDNFSQATALYKQVFDDAAKQRAIANIVDHLKDAAAFIQERAIKIFSQVHP-ELG 490
           D G   +N  +A    + VF  A+ Q  +  + DH      +  E AI+   Q +P EL 
Sbjct: 128 DDGYESENGYRAADGVRDVFHPASTQYHVHPVHDHSICCILYSAEYAIEDSDQANPKELV 187

Query: 491 NKVAAGLAPYKKY 503
           N V + L   KK+
Sbjct: 188 NDVGSLLKSNKKH 200


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.137    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,276,398
Number of Sequences: 59808
Number of extensions: 820579
Number of successful extensions: 1708
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1701
Number of HSP's gapped (non-prelim): 12
length of query: 507
length of database: 16,821,457
effective HSP length: 85
effective length of query: 422
effective length of database: 11,737,777
effective search space: 4953341894
effective search space used: 4953341894
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)