Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000700-TA|BGIBMGA000700-PA|undefined
         (203 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.22 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.22 
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    23   2.0  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   8.2  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   8.2  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   8.2  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   8.2  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   8.2  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 96   ESDPKRPWRTNSNKEKLLRIDNELKRHLDKATDLIAPLSDGEMSDIIKQSREESITTR 153
            ESDP +   T+S  E   ++D    +H+   +D I   +    SDI   S ++S+  R
Sbjct: 1786 ESDPDQ--LTSSRTESSNQLDAGKLKHIRAVSDFIYHGTSSTSSDISPMSEQKSLPRR 1841


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 96   ESDPKRPWRTNSNKEKLLRIDNELKRHLDKATDLIAPLSDGEMSDIIKQSREESITTR 153
            ESDP +   T+S  E   ++D    +H+   +D I   +    SDI   S ++S+  R
Sbjct: 1782 ESDPDQ--LTSSRTESSNQLDAGKLKHIRAVSDFIYHGTSSTSSDISPMSEQKSLPRR 1837


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 2/19 (10%)

Query: 163 TVEEAKKTLFNFQYRAVCN 181
           T+EEAKKT+ N   R VC+
Sbjct: 28  TIEEAKKTIKNL--RKVCS 44


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1
          alpha protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 27 RCSGLVKDIREKFGKDSNE 45
          +C G+ K   EKF K++ E
Sbjct: 30 KCGGIDKRTIEKFEKEAQE 48


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 15/62 (24%), Positives = 26/62 (41%)

Query: 117 NELKRHLDKATDLIAPLSDGEMSDIIKQSREESITTRPVEYVRLVDTVEEAKKTLFNFQY 176
           NELKR L  A          +  ++IK+  +  +  +P  +  L +  +  KK    F+ 
Sbjct: 62  NELKRVLPDALATDCKKCTDKQREVIKKVIKFLVENKPELWDSLANKYDPDKKYRVKFEE 121

Query: 177 RA 178
            A
Sbjct: 122 EA 123


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 15/62 (24%), Positives = 26/62 (41%)

Query: 117 NELKRHLDKATDLIAPLSDGEMSDIIKQSREESITTRPVEYVRLVDTVEEAKKTLFNFQY 176
           NELKR L  A          +  ++IK+  +  +  +P  +  L +  +  KK    F+ 
Sbjct: 62  NELKRVLPDALATDCKKCTDKQREVIKKVIKFLVENKPELWDSLANKYDPDKKFRVKFEE 121

Query: 177 RA 178
            A
Sbjct: 122 EA 123


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 15/62 (24%), Positives = 26/62 (41%)

Query: 117 NELKRHLDKATDLIAPLSDGEMSDIIKQSREESITTRPVEYVRLVDTVEEAKKTLFNFQY 176
           NELKR L  A          +  ++IK+  +  +  +P  +  L +  +  KK    F+ 
Sbjct: 62  NELKRVLPDALATDCKKCTDKQREVIKKVIKFLVENKPELWDSLANKYDPDKKYRVKFEE 121

Query: 177 RA 178
            A
Sbjct: 122 EA 123


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation
          factor-1alpha F2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 27 RCSGLVKDIREKFGKDSNE 45
          +C G+ K   EKF K++ E
Sbjct: 30 KCGGIDKRTIEKFEKEAQE 48


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.309    0.128    0.350 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,421
Number of Sequences: 429
Number of extensions: 2857
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 203
length of database: 140,377
effective HSP length: 55
effective length of query: 148
effective length of database: 116,782
effective search space: 17283736
effective search space used: 17283736
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 42 (21.0 bits)