GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000699-TA|BGIBMGA000699-PA|IPR000159|RA,
IPR001849|Pleckstrin-like
         (1023 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0735 + 10811326-10812342,10813199-10813555,10813962-108142...    34   0.67 
06_03_0270 + 19009412-19009888,19009936-19011048,19011810-190118...    33   0.89 
04_04_1401 + 33279092-33279286,33280223-33280306,33280459-332805...    31   4.7  

>03_02_0735 +
           10811326-10812342,10813199-10813555,10813962-10814225,
           10814894-10815010,10815796-10815944,10816315-10816606,
           10816681-10816845,10817106-10817357
          Length = 870

 Score = 33.9 bits (74), Expect = 0.67
 Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 229 DKNHVNMEPKWAIVEHL--PDLNMERVYEDHEMLVDNLMLWTRESKNKILFAERPDKISL 286
           D+  V+M  + A++E +  P   +      ++ +V +L LW R++ +KILF  +  ++SL
Sbjct: 490 DREDVHMNIEAALIEKVGEPAKKLHTARSRNDQIVTDLRLWCRDAIDKILFRIKQFQVSL 549

Query: 287 FQAPEKFL 294
                K++
Sbjct: 550 VLLASKYV 557


>06_03_0270 +
           19009412-19009888,19009936-19011048,19011810-19011899,
           19011928-19012027,19012135-19012333,19012559-19012679
          Length = 699

 Score = 33.5 bits (73), Expect = 0.89
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 752 QLTAQQIEQASRAGQCRVTARTSEPTRSFPRQPSLDSVHSEASRSSSLPS 801
           Q+TA+QI + +R+G+   + R+  P+R  P   S  S  S A+RSS  PS
Sbjct: 52  QITAEQILREARSGR---SPRSVPPSRRSPTPSSSPSTASAAARSSRTPS 98


>04_04_1401 +
           33279092-33279286,33280223-33280306,33280459-33280524,
           33280945-33281028,33281181-33281246,33281719-33281802,
           33281955-33282020,33282323-33282388,33282667-33282726,
           33282805-33282888,33282968-33283111,33283552-33283586,
           33283694-33283746,33283828-33283928,33284516-33284974
          Length = 548

 Score = 31.1 bits (67), Expect = 4.7
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 9/91 (9%)

Query: 322 NGAGASTVPSVSGHPVPPMEGPLYLKNDSKKGWKKIYCVLRPSGLY----YSPKDKVKTL 377
           NG G  + PS    P PP   PL     S + +   Y      G +     S +  + TL
Sbjct: 25  NGGGGGSPPSSPSPPSPPSPQPLLPTLPSPQAFVDAYTGYEDQGAWDPDSLSLELGLATL 84

Query: 378 KELVCLATFDTNEVYIGLNWKKKYKSPTDYC 408
           +EL C+   +  E     +W+K   + +D C
Sbjct: 85  RELECIRYQEAQE-----DWRKSDDNKSDSC 110


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.127    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,973,622
Number of Sequences: 37544
Number of extensions: 1031173
Number of successful extensions: 2023
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2022
Number of HSP's gapped (non-prelim): 3
length of query: 1023
length of database: 14,793,348
effective HSP length: 89
effective length of query: 934
effective length of database: 11,451,932
effective search space: 10696104488
effective search space used: 10696104488
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 65 (30.3 bits)