Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000698-TA|BGIBMGA000698-PA|IPR002048|Calcium-binding
EF-hand, IPR006573|NEUZ, IPR001220|Legume lectin, beta domain,
IPR011034|Formyl transferase, C-terminal-like
         (1612 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           25   3.2  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    24   7.3  
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    24   9.7  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    24   9.7  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    24   9.7  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        24   9.7  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 17/54 (31%), Positives = 22/54 (40%)

Query: 1014 RETDNQFGIGNEPSTSNTESNKNVRENLIASIDTANTESNTMSTLTVVPTETRR 1067
            R +D Q    N+PSTSN   + N   N        N   N  +T +    ET R
Sbjct: 357  RSSDEQQWRNNQPSTSNNRWHNNNGNNSNNHWRKNNPNDNRNNTSSRAQGETSR 410


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory protein
            6 protein.
          Length = 251

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 15/62 (24%), Positives = 26/62 (41%)

Query: 1015 ETDNQFGIGNEPSTSNTESNKNVRENLIASIDTANTESNTMSTLTVVPTETRRRRNPLPY 1074
            ET  + G  +   ++NT     +  N     + A+  SN +S+  + PT +   R  L  
Sbjct: 116  ETSFESGKPSGVISTNTSPPSPILSNRFGENEEADAASNVISSTPLPPTTSTTTRTTLTT 175

Query: 1075 TF 1076
             F
Sbjct: 176  KF 177


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxygenase
            protein.
          Length = 228

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 11/44 (25%), Positives = 21/44 (47%)

Query: 1253 AENQREESMSDLDMNEEPTRELFETNLTEMRIRRKLKAYSHDNL 1296
            AE  +   ++DL+   E    +F+  + E  + R  + +SH  L
Sbjct: 67   AETLKRYKLNDLEKRREVYESIFKVEVHEALMSRGERRFSHKAL 110


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxygenase
            protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 11/44 (25%), Positives = 21/44 (47%)

Query: 1253 AENQREESMSDLDMNEEPTRELFETNLTEMRIRRKLKAYSHDNL 1296
            AE  +   ++DL+   E    +F+  + E  + R  + +SH  L
Sbjct: 227  AETLKRYKLNDLEKRREVYESIFKVEVHEALMSRGERRFSHKAL 270


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxygenase
            protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 11/44 (25%), Positives = 21/44 (47%)

Query: 1253 AENQREESMSDLDMNEEPTRELFETNLTEMRIRRKLKAYSHDNL 1296
            AE  +   ++DL+   E    +F+  + E  + R  + +SH  L
Sbjct: 227  AETLKRYKLNDLEKRREVYESIFKVEVHEALMSRGERRFSHKAL 270


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 1440 DALTLETGNLPDLTEEQSSSLDESTRRDE 1468
            D   LET NL +   +  S +DES  R E
Sbjct: 499  DLSMLETNNLSETFTQNLSLMDESEGRQE 527


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.136    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 366,115
Number of Sequences: 317
Number of extensions: 15352
Number of successful extensions: 37
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 7
length of query: 1612
length of database: 114,650
effective HSP length: 66
effective length of query: 1546
effective length of database: 93,728
effective search space: 144903488
effective search space used: 144903488
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)