Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000698-TA|BGIBMGA000698-PA|IPR002048|Calcium-binding
EF-hand, IPR006573|NEUZ, IPR001220|Legume lectin, beta domain,
IPR011034|Formyl transferase, C-terminal-like
         (1612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    33   0.43 
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    32   0.57 
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    32   0.57 
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    32   0.76 
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    31   1.00 
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    31   1.00 
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    30   2.3  
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    29   5.3  
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    29   5.3  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    29   7.0  
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    29   7.0  

>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 32.7 bits (71), Expect = 0.43
 Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 6/65 (9%)

Query: 102 SYGPELDTLREGDCLGVMRTSKAELTFYI-NGRCLGVAAKDLPPRLFAVIDL--YGQCVQ 158
           +YGPE  T   GD +G          FY  NG  LGVA K +   L+ VI L  +G+ V+
Sbjct: 169 AYGPEFTT---GDIIGCGVNFINRTIFYTKNGAYLGVAFKKVSDVLYPVIGLKSHGEHVE 225

Query: 159 VSISQ 163
           V+  Q
Sbjct: 226 VNFGQ 230


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 416

 Score = 32.3 bits (70), Expect = 0.57
 Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 3/84 (3%)

Query: 982  TTTIPNKSIPKRQPQLNED--GTICPVSTSANMDRETDNQFGIGNEPSTSNTESNKNVRE 1039
            TTTIP + I     ++ E   GT+    TS  +   T      G    T    S KN   
Sbjct: 104  TTTIPAEGITSGTVEIVEPTAGTVTETITSGTLPFTTTLAQASGTVSGTVEIVSPKN-NP 162

Query: 1040 NLIASIDTANTESNTMSTLTVVPT 1063
              + S   A TE+ + ST+ V+PT
Sbjct: 163  TTVYSGTVATTETFSSSTVVVIPT 186


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 416

 Score = 32.3 bits (70), Expect = 0.57
 Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 3/84 (3%)

Query: 982  TTTIPNKSIPKRQPQLNED--GTICPVSTSANMDRETDNQFGIGNEPSTSNTESNKNVRE 1039
            TTTIP + I     ++ E   GT+    TS  +   T      G    T    S KN   
Sbjct: 104  TTTIPAEGITSGTVEIVEPTAGTVTETITSGTLPFTTTLAQASGTVSGTVEIVSPKN-NP 162

Query: 1040 NLIASIDTANTESNTMSTLTVVPT 1063
              + S   A TE+ + ST+ V+PT
Sbjct: 163  TTVYSGTVATTETFSSSTVVVIPT 186


>SPCC1235.05c |fft2||fun thirty related protein
            Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 31.9 bits (69), Expect = 0.76
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 8/97 (8%)

Query: 981  NTTTIPNKSIPKRQPQL--NEDGTICPV---STSANMDRETDNQFGIG--NEPSTSNTES 1033
            NT ++PN  IP   P +     GT+ P+     +A+     +N + IG  N  S    + 
Sbjct: 129  NTASLPNAGIPAAMPGMPSGYPGTV-PIPQGGYNAHYSSPYNNGYPIGAVNPTSAIPAQP 187

Query: 1034 NKNVRENLIASIDTANTESNTMSTLTVVPTETRRRRN 1070
                  N++ S   +N+ S+  ST    P  T+R R+
Sbjct: 188  PAQPVNNVLPSYVRSNSRSSARSTARSAPRSTQRSRS 224


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 772

 Score = 31.5 bits (68), Expect = 1.00
 Identities = 13/37 (35%), Positives = 22/37 (59%)

Query: 1027 STSNTESNKNVRENLIASIDTANTESNTMSTLTVVPT 1063
            ST N+ SNKN+R +L   + T+N  +  +S  +  P+
Sbjct: 307  STKNSSSNKNLRSSLSKLLSTSNLNNKPLSLSSTAPS 343


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 31.5 bits (68), Expect = 1.00
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 154 GQCVQVSISQVNGLRTAMELCLVQAEDDPNNDDTLTSSEIDVAGLPSAPFPKETQNIYV 212
           G  + +S+SQ   L   M+      +DDP+ DD +      ++ +P+   PK+ Q + +
Sbjct: 435 GSVIGISLSQTTTLSILMKQLASNLKDDPDKDDLIRRLRESISIIPN--LPKDIQKLVI 491


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 51  KVNVWNGSLEIGVTTLDPEFMELPATATKLRN-TAWIMSGSSIVKDGVTLVNS 102
           K  + N SLEI   ++ PE+ +L  TA  L N + W ++  +   DG T++ S
Sbjct: 500 KYTIKNNSLEIEYKSVIPEYSKLNVTAVNLTNHSYWNLASPNKTIDG-TIIKS 551


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 393

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 1422 NDRYPEANDVDNLDNEIMDALTLETGNLPDLTEEQSSSLDESTRRDELWS-EQLSIENLN 1480
            N  YP  + +D L  +  + + LE G LP+   E  S+L   +    L   +Q+   N N
Sbjct: 3    NKYYPLRSSMDELSAKNDNEIDLEKGPLPEYNSEDGSTLPPYSENINLKDPKQMGANNPN 62

Query: 1481 YLN 1483
              N
Sbjct: 63   LFN 65


>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 368

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 1422 NDRYPEANDVDNLDNEIMDALTLETGNLPDLTEEQSSSLDESTRRDELWS-EQLSIENLN 1480
            N  YP  + +D L  +  + + LE G LP+   E  S+L   +    L   +Q+   N N
Sbjct: 3    NKYYPLRSSMDELSAKNDNEIDLEKGPLPEYNSEDGSTLPPYSENINLKDPKQMGANNPN 62

Query: 1481 YLN 1483
              N
Sbjct: 63   LFN 65


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 1426 PEANDVDNLDNEIMDALTLETGNLPDLTEEQSSSLDESTRRDE--LWSEQLSI 1476
            P+  D +  ++  +D + L+T +LP+  +E +S L  S+  DE  + S+QL+I
Sbjct: 369  PDLEDCNTKESIHIDDI-LKTSSLPEARDESNSDLTPSSTEDEEDVVSDQLAI 420


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 345

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 15 NDNSTAIRNFVE-FNHGLILSAEPISDDVMFEVCIDRKVNVWNGSLE 60
          ND    +R+++E F H  +      + D +      RK N WNGSL+
Sbjct: 4  NDKKKVVRSWIEQFVHDFVEQLSKPTKDSVNVALKRRKHNSWNGSLD 50


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.136    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,332,276
Number of Sequences: 5004
Number of extensions: 316896
Number of successful extensions: 781
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 777
Number of HSP's gapped (non-prelim): 13
length of query: 1612
length of database: 2,362,478
effective HSP length: 82
effective length of query: 1530
effective length of database: 1,952,150
effective search space: 2986789500
effective search space used: 2986789500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)