Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000698-TA|BGIBMGA000698-PA|IPR002048|Calcium-binding
EF-hand, IPR006573|NEUZ, IPR001220|Legume lectin, beta domain,
IPR011034|Formyl transferase, C-terminal-like
(1612 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ... 33 0.43
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 32 0.57
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 32 0.57
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 32 0.76
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 31 1.00
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte... 31 1.00
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 30 2.3
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|... 29 5.3
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|... 29 5.3
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 29 7.0
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ... 29 7.0
>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 486
Score = 32.7 bits (71), Expect = 0.43
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 102 SYGPELDTLREGDCLGVMRTSKAELTFYI-NGRCLGVAAKDLPPRLFAVIDL--YGQCVQ 158
+YGPE T GD +G FY NG LGVA K + L+ VI L +G+ V+
Sbjct: 169 AYGPEFTT---GDIIGCGVNFINRTIFYTKNGAYLGVAFKKVSDVLYPVIGLKSHGEHVE 225
Query: 159 VSISQ 163
V+ Q
Sbjct: 226 VNFGQ 230
>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 416
Score = 32.3 bits (70), Expect = 0.57
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 982 TTTIPNKSIPKRQPQLNED--GTICPVSTSANMDRETDNQFGIGNEPSTSNTESNKNVRE 1039
TTTIP + I ++ E GT+ TS + T G T S KN
Sbjct: 104 TTTIPAEGITSGTVEIVEPTAGTVTETITSGTLPFTTTLAQASGTVSGTVEIVSPKN-NP 162
Query: 1040 NLIASIDTANTESNTMSTLTVVPT 1063
+ S A TE+ + ST+ V+PT
Sbjct: 163 TTVYSGTVATTETFSSSTVVVIPT 186
>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
Length = 416
Score = 32.3 bits (70), Expect = 0.57
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 982 TTTIPNKSIPKRQPQLNED--GTICPVSTSANMDRETDNQFGIGNEPSTSNTESNKNVRE 1039
TTTIP + I ++ E GT+ TS + T G T S KN
Sbjct: 104 TTTIPAEGITSGTVEIVEPTAGTVTETITSGTLPFTTTLAQASGTVSGTVEIVSPKN-NP 162
Query: 1040 NLIASIDTANTESNTMSTLTVVPT 1063
+ S A TE+ + ST+ V+PT
Sbjct: 163 TTVYSGTVATTETFSSSTVVVIPT 186
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 31.9 bits (69), Expect = 0.76
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 981 NTTTIPNKSIPKRQPQL--NEDGTICPV---STSANMDRETDNQFGIG--NEPSTSNTES 1033
NT ++PN IP P + GT+ P+ +A+ +N + IG N S +
Sbjct: 129 NTASLPNAGIPAAMPGMPSGYPGTV-PIPQGGYNAHYSSPYNNGYPIGAVNPTSAIPAQP 187
Query: 1034 NKNVRENLIASIDTANTESNTMSTLTVVPTETRRRRN 1070
N++ S +N+ S+ ST P T+R R+
Sbjct: 188 PAQPVNNVLPSYVRSNSRSSARSTARSAPRSTQRSRS 224
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 31.5 bits (68), Expect = 1.00
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 1027 STSNTESNKNVRENLIASIDTANTESNTMSTLTVVPT 1063
ST N+ SNKN+R +L + T+N + +S + P+
Sbjct: 307 STKNSSSNKNLRSSLSKLLSTSNLNNKPLSLSSTAPS 343
>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 31.5 bits (68), Expect = 1.00
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 154 GQCVQVSISQVNGLRTAMELCLVQAEDDPNNDDTLTSSEIDVAGLPSAPFPKETQNIYV 212
G + +S+SQ L M+ +DDP+ DD + ++ +P+ PK+ Q + +
Sbjct: 435 GSVIGISLSQTTTLSILMKQLASNLKDDPDKDDLIRRLRESISIIPN--LPKDIQKLVI 491
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 30.3 bits (65), Expect = 2.3
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 51 KVNVWNGSLEIGVTTLDPEFMELPATATKLRN-TAWIMSGSSIVKDGVTLVNS 102
K + N SLEI ++ PE+ +L TA L N + W ++ + DG T++ S
Sbjct: 500 KYTIKNNSLEIEYKSVIPEYSKLNVTAVNLTNHSYWNLASPNKTIDG-TIIKS 551
>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
3|||Manual
Length = 393
Score = 29.1 bits (62), Expect = 5.3
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 1422 NDRYPEANDVDNLDNEIMDALTLETGNLPDLTEEQSSSLDESTRRDELWS-EQLSIENLN 1480
N YP + +D L + + + LE G LP+ E S+L + L +Q+ N N
Sbjct: 3 NKYYPLRSSMDELSAKNDNEIDLEKGPLPEYNSEDGSTLPPYSENINLKDPKQMGANNPN 62
Query: 1481 YLN 1483
N
Sbjct: 63 LFN 65
>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
3|||Manual
Length = 368
Score = 29.1 bits (62), Expect = 5.3
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 1422 NDRYPEANDVDNLDNEIMDALTLETGNLPDLTEEQSSSLDESTRRDELWS-EQLSIENLN 1480
N YP + +D L + + + LE G LP+ E S+L + L +Q+ N N
Sbjct: 3 NKYYPLRSSMDELSAKNDNEIDLEKGPLPEYNSEDGSTLPPYSENINLKDPKQMGANNPN 62
Query: 1481 YLN 1483
N
Sbjct: 63 LFN 65
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 28.7 bits (61), Expect = 7.0
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 1426 PEANDVDNLDNEIMDALTLETGNLPDLTEEQSSSLDESTRRDE--LWSEQLSI 1476
P+ D + ++ +D + L+T +LP+ +E +S L S+ DE + S+QL+I
Sbjct: 369 PDLEDCNTKESIHIDDI-LKTSSLPEARDESNSDLTPSSTEDEEDVVSDQLAI 420
>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 28.7 bits (61), Expect = 7.0
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 15 NDNSTAIRNFVE-FNHGLILSAEPISDDVMFEVCIDRKVNVWNGSLE 60
ND +R+++E F H + + D + RK N WNGSL+
Sbjct: 4 NDKKKVVRSWIEQFVHDFVEQLSKPTKDSVNVALKRRKHNSWNGSLD 50
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.136 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,332,276
Number of Sequences: 5004
Number of extensions: 316896
Number of successful extensions: 781
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 777
Number of HSP's gapped (non-prelim): 13
length of query: 1612
length of database: 2,362,478
effective HSP length: 82
effective length of query: 1530
effective length of database: 1,952,150
effective search space: 2986789500
effective search space used: 2986789500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)
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