GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000698-TA|BGIBMGA000698-PA|IPR002048|Calcium-binding
EF-hand, IPR006573|NEUZ, IPR001220|Legume lectin, beta domain,
IPR011034|Formyl transferase, C-terminal-like
         (1612 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0246 + 21837144-21838194,21838692-21840038,21840576-218406...    35   0.62 
04_03_0955 + 21215380-21215991,21216058-21216639                       33   1.4  
09_06_0244 + 21822811-21823246,21823337-21823468,21823949-218240...    31   5.8  
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11...    31   7.6  

>09_06_0246 +
           21837144-21838194,21838692-21840038,21840576-21840656,
           21842740-21842924
          Length = 887

 Score = 34.7 bits (76), Expect = 0.62
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query: 136 GVAAKDLPPRLFAVIDLYGQCVQVSISQVNGLRTAMELCLVQAEDDPNNDD 186
           G +   +P  +F + + Y   +   I+ VNG  T + LCL    DD ++DD
Sbjct: 616 GSSYMPMPSEIFNIHNTYTSSISRDIAIVNGRLTVVRLCLYLDSDDDSDDD 666


>04_03_0955 + 21215380-21215991,21216058-21216639
          Length = 397

 Score = 33.5 bits (73), Expect = 1.4
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 1489 DQEMDEGQSLESEWEASGEGCEHLHLVLKYWNF-LVCPYPELRKPVSWGQVRCYCSNCQP 1547
            + E+        ++EA   G +H     KYW   L+ P P LR P+    V  YC +   
Sbjct: 156  NMELRYKDQTSDQFEAYTYGQQHKKTSFKYWKCQLLPPPPYLRDPMQMKDVGTYCMDIAT 215

Query: 1548 DLLPPFAGWV 1557
                P   W+
Sbjct: 216  HTWSPVGKWM 225


>09_06_0244 + 21822811-21823246,21823337-21823468,21823949-21824037,
            21824135-21824224,21825033-21825603,21826097-21826734,
            21826978-21827098,21827223-21827337,21828234-21829723,
            21829830-21829901,21830151-21830196,21830413-21830515,
            21830591-21830674,21831035-21831475,21831651-21831746,
            21831896-21832045,21832131-21832274,21832414-21832527,
            21832621-21832803,21832901-21832945,21833058-21833192
          Length = 1764

 Score = 31.5 bits (68), Expect = 5.8
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 1255 NQREESMSDLDMNE--EPTRELFETNLTEMRIRRKLKAYSHDNLIEDELEPIAAQPGPSS 1312
            N     + D++MN    P+   + T    +   R   A+ + N +E  L  ++  PGPSS
Sbjct: 356  NLANHMIHDMNMNSISRPSERTYSTANMGITYSRNHLAHDYANFLEKNLNNLSRSPGPSS 415

Query: 1313 RR 1314
             R
Sbjct: 416  TR 417


>11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-110394,
            110491-110603,111080-111118,111319-111402,111486-111534,
            111624-111715,111999-112128,112225-112301,112377-113995,
            114348-114545,114635-115173
          Length = 1166

 Score = 31.1 bits (67), Expect = 7.6
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 976  GVAASNTTTIPNKSIPKRQPQLNEDGTICPVSTSANMDRETDNQFGIGNEPSTSNTESNK 1035
            G   S +TT P K I     + +    +   S S +  ++ D  + + N  S ++T   +
Sbjct: 520  GHLTSKSTTSPKKDIAVNSTRQSPLNCVSSPSISKSEVKDGDGDYQVTNMASKTSTSVIR 579

Query: 1036 NVRENLIASIDTANTESNTMST 1057
              + N  A+IDTA  ++ + ST
Sbjct: 580  KDQSNQ-AAIDTATEDTRSEST 600


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.136    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,521,245
Number of Sequences: 37544
Number of extensions: 1997300
Number of successful extensions: 4086
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4083
Number of HSP's gapped (non-prelim): 5
length of query: 1612
length of database: 14,793,348
effective HSP length: 92
effective length of query: 1520
effective length of database: 11,339,300
effective search space: 17235736000
effective search space used: 17235736000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 67 (31.1 bits)