GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000698-TA|BGIBMGA000698-PA|IPR002048|Calcium-binding
EF-hand, IPR006573|NEUZ, IPR001220|Legume lectin, beta domain,
IPR011034|Formyl transferase, C-terminal-like
         (1612 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03170.1 68417.m00433 hypothetical protein                          34   0.68 
At3g59430.2 68416.m06629 expressed protein                             32   2.7  
At3g59430.1 68416.m06628 expressed protein                             32   2.7  
At2g27880.1 68415.m03380 argonaute protein, putative / AGO, puta...    32   3.6  
At5g23180.1 68418.m02711 hypothetical protein                          31   4.8  
At3g14980.1 68416.m01894 PHD finger transcription factor, putati...    31   8.4  

>At4g03170.1 68417.m00433 hypothetical protein 
          Length = 250

 Score = 34.3 bits (75), Expect = 0.68
 Identities = 16/51 (31%), Positives = 27/51 (52%)

Query: 1423 DRYPEANDVDNLDNEIMDALTLETGNLPDLTEEQSSSLDESTRRDELWSEQ 1473
            DR  + +D D++D+E++D    E  +LP L E Q++      R +E    Q
Sbjct: 34   DREEDIDDEDDIDDEVIDDEDYEVASLPLLQESQANQKQSREREEETEKNQ 84


>At3g59430.2 68416.m06629 expressed protein 
          Length = 451

 Score = 32.3 bits (70), Expect = 2.7
 Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 9/97 (9%)

Query: 981  NTTTIPNKSIPKRQPQLNEDGTICPVSTSANMDRETDNQF---GIGNEPSTSNTESNKNV 1037
            N   I   S P    +LNE G   P + S   D   +N+      G+ PS+S+ E + ++
Sbjct: 118  NDGLIDFTSAPPYMRKLNEKG---PTANSKRADSRLENRMRDVDSGDNPSSSSFEFHVSL 174

Query: 1038 RENLIASIDTANTES---NTMSTLTVVPTETRRRRNP 1071
             E +  S+D     S   N+M     V    RRR++P
Sbjct: 175  EEGISLSVDLNFNPSDWINSMRDEVNVCDSMRRRKSP 211


>At3g59430.1 68416.m06628 expressed protein 
          Length = 451

 Score = 32.3 bits (70), Expect = 2.7
 Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 9/97 (9%)

Query: 981  NTTTIPNKSIPKRQPQLNEDGTICPVSTSANMDRETDNQF---GIGNEPSTSNTESNKNV 1037
            N   I   S P    +LNE G   P + S   D   +N+      G+ PS+S+ E + ++
Sbjct: 118  NDGLIDFTSAPPYMRKLNEKG---PTANSKRADSRLENRMRDVDSGDNPSSSSFEFHVSL 174

Query: 1038 RENLIASIDTANTES---NTMSTLTVVPTETRRRRNP 1071
             E +  S+D     S   N+M     V    RRR++P
Sbjct: 175  EEGISLSVDLNFNPSDWINSMRDEVNVCDSMRRRKSP 211


>At2g27880.1 68415.m03380 argonaute protein, putative / AGO, putative
            similar to SP|O04379 Argonaute protein (AGO1)
            {Arabidopsis thaliana}; contains Pfam profiles PF02170:
            PAZ domain, PF02171: Piwi domain
          Length = 997

 Score = 31.9 bits (69), Expect = 3.6
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 5/73 (6%)

Query: 1002 TICPVSTSANMDRETDNQFGIGNEPSTSNTESNKNVRENLIASIDTANTE-SNTMSTLTV 1060
            T  PV+++ +  R   N   IG +P+ S   S+K V     +  ++ NTE S TMS L +
Sbjct: 70   TQVPVASAVSGGRGRGN---IG-DPTFSVASSSKTVSVASSSKEESKNTEVSETMSNLQI 125

Query: 1061 VPTETRRRRNPLP 1073
              TET+     LP
Sbjct: 126  TSTETKPEMTSLP 138


>At5g23180.1 68418.m02711 hypothetical protein
          Length = 138

 Score = 31.5 bits (68), Expect = 4.8
 Identities = 12/52 (23%), Positives = 29/52 (55%)

Query: 993  RQPQLNEDGTICPVSTSANMDRETDNQFGIGNEPSTSNTESNKNVRENLIAS 1044
            +QP+  E+  +    +S      T+N++G   E + S+ + ++  R+N+I++
Sbjct: 4    KQPEKIENPPMASAPSSEKESGSTENEYGSSGEETNSSDDEHEEARDNVIST 55


>At3g14980.1 68416.m01894 PHD finger transcription factor, putative
            contains Pfam profile: PF00628 PHD-finger
          Length = 1189

 Score = 30.7 bits (66), Expect = 8.4
 Identities = 22/99 (22%), Positives = 42/99 (42%)

Query: 1403 ADHSDSLSHGQFYDTNIRHNDRYPEANDVDNLDNEIMDALTLETGNLPDLTEEQSSSLDE 1462
            AD ++  S  +    +   NDR  +   V   + E  + L  +   L +  +E + +   
Sbjct: 1091 ADQTEPTSETENPSRDSNANDRPNKTTVVSIGEEEEEECLQKDVSKLSEEGKETTRASSS 1150

Query: 1463 STRRDELWSEQLSIENLNYLNRILCFDQEMDEGQSLESE 1501
            S   +E+    L + N      +LC D+++D   S +SE
Sbjct: 1151 SAALEEVSGLGLGVVNNVSDEMLLCVDEQLDSDSSQDSE 1189


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.136    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,941,182
Number of Sequences: 28952
Number of extensions: 1646242
Number of successful extensions: 3620
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3616
Number of HSP's gapped (non-prelim): 7
length of query: 1612
length of database: 12,070,560
effective HSP length: 91
effective length of query: 1521
effective length of database: 9,435,928
effective search space: 14352046488
effective search space used: 14352046488
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 66 (30.7 bits)