GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000697-TA|BGIBMGA000697-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (339 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   3.8  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   5.1  

>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 55   FLNFKGLSNEVINYYLLSLAVADLLCGLLVVPLSVYPAITGRWMFGDLMCRLAGYVEVTL 114
            FL  K L NE +    +  A+ + +  +L +  + +P+I G  +F D+   +A + E  L
Sbjct: 2043 FLLEKSLENESVG---VQSAIGNFVSTILTLS-NTHPSIAGNPIFNDIWTSIASWTERRL 2098

Query: 115  WSVS 118
             S S
Sbjct: 2099 QSCS 2102


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 17/56 (30%), Positives = 25/56 (44%)

Query: 220 KRKLHSGVPIHDKEYATALAENLANPSHWMSFVLVSVFWLSWAPYAGVRMYEYVTN 275
           KR +     IH +  ATA       P H + F+ V  F       A V+ Y+++TN
Sbjct: 628 KRLMGIRFVIHYRSLATAFLFADREPDHSVMFLSVQFFTTPSLAEAVVKDYDFLTN 683


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.328    0.139    0.453 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,434,126
Number of Sequences: 5004
Number of extensions: 58585
Number of successful extensions: 156
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 155
Number of HSP's gapped (non-prelim): 2
length of query: 339
length of database: 2,362,478
effective HSP length: 73
effective length of query: 266
effective length of database: 1,997,186
effective search space: 531251476
effective search space used: 531251476
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 54 (25.8 bits)