GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000697-TA|BGIBMGA000697-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (339 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0334 - 29358823-29360247                                         28   9.4  
01_06_1510 - 37859664-37861319                                         28   9.4  
01_01_0764 + 5910687-5910961,5912549-5912636,5912750-5912909,591...    28   9.4  

>05_07_0334 - 29358823-29360247
          Length = 474

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 78  LLCGLLVVPLSVYPAITGRWMFGDLMCRLAGYVEVTLWSVSV 119
           LLC LL+  + +  A  GRW + +   RL    E T W+V +
Sbjct: 5   LLCLLLLQLVGLVVAGGGRWRWQEEFLRLPSSDETTRWAVLI 46


>01_06_1510 - 37859664-37861319
          Length = 551

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 11/129 (8%)

Query: 120 YTFMWISVDRYLAVRKPLRYETVQTRTRSQCWMVFTWISAAMLCCPPLLGYKKDANFDKE 179
           Y+ ++++ D+ LAVR P  +  +    R+   +VF    A+  C   L+    DA +++E
Sbjct: 245 YSLLFLTADKLLAVRDPFGFRPLVMGRRANGAIVF----ASETCALDLI----DATYERE 296

Query: 180 TFICMLDWGTTYAYTATLGILVLGPSVISIVYNYFYIFSMKRKLHSGVPIHDKE--YATA 237
                +        + +   LV      S V+ + Y F++   +  G  +H++   Y  A
Sbjct: 297 VEPGEVVVVDRRDMSVSSACLVPHRPRKSCVFEHIY-FALPNSVVFGHAVHERRNAYGRA 355

Query: 238 LAENLANPS 246
           LAE    P+
Sbjct: 356 LAEESPAPT 364


>01_01_0764 +
           5910687-5910961,5912549-5912636,5912750-5912909,
           5913017-5913237,5913315-5913610,5914176-5914287,
           5914376-5914514,5914850-5915046,5915134-5915223,
           5915611-5915646
          Length = 537

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 15/51 (29%), Positives = 34/51 (66%), Gaps = 5/51 (9%)

Query: 277 EIKIPMLHFGMVWLGIMNSFWKIIILISLSPQF--RLA---LRILCLTACC 322
           E K+ + +   ++LG++++  + +++++LS ++  RLA   L +LCLT+ C
Sbjct: 119 EHKVRVFYSVRIFLGLISTITETVLVVALSRKYGKRLACYVLAMLCLTSGC 169


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.328    0.139    0.453 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,787,825
Number of Sequences: 37544
Number of extensions: 343263
Number of successful extensions: 727
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 726
Number of HSP's gapped (non-prelim): 3
length of query: 339
length of database: 14,793,348
effective HSP length: 82
effective length of query: 257
effective length of database: 11,714,740
effective search space: 3010688180
effective search space used: 3010688180
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 60 (28.3 bits)