GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000697-TA|BGIBMGA000697-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (339 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54870.1 68418.m06835 expressed protein strong similarity to ...    33   0.27 
At5g01660.1 68418.m00082 kelch repeat-containing protein similar...    30   2.5  
At1g61900.2 68414.m06984 expressed protein contains similarity t...    29   3.4  
At1g61900.1 68414.m06983 expressed protein contains similarity t...    29   3.4  
At2g35330.1 68415.m04332 zinc finger (C3HC4-type RING finger) pr...    29   4.4  
At3g05010.1 68416.m00544 transmembrane protein, putative similar...    29   5.9  

>At5g54870.1 68418.m06835 expressed protein strong similarity to
           unknown protein (pir||T04825)
          Length = 531

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 248 WMSFVLVSVFWLSWAPYAGVRMYEYVTNQEIKIPMLHFGMVWLGIMNSFWKIIILIS 304
           W  + +     + +  + G   YEYV N+ + I ++H GM  LG + + W +  L S
Sbjct: 134 WTWYFISRQHTVEFPEWDGKAEYEYVKNKGVSIFLMHAGM--LGTLQALWDVFPLFS 188


>At5g01660.1 68418.m00082 kelch repeat-containing protein similar to
           SP|P57790 Kelch-like ECH-associated protein 1 (Cytosolic
           inhibitor of Nrf2) {Rattus norvegicus}; contains Pfam
           profile PF01344: Kelch motif
          Length = 621

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 83  LVVPLSVYPAITGRWMFGDLMCRLAGYVEVTLWSVSVY 120
           +V  + +Y   TG WM G+ M  L GY  V +   S+Y
Sbjct: 540 MVSSVEIYEPRTGTWMTGEPMKDLRGYSAVAVVKDSIY 577


>At1g61900.2 68414.m06984 expressed protein contains similarity to
           glutamic acid/alanine-rich protein GI:6707830 from
           [Trypanosoma congolense]
          Length = 413

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 142 VQTRTRSQCWMVFTWISAAMLCCPPL 167
           +QT T   CW VF  + A ++CCP L
Sbjct: 80  IQT-TSHNCWTVFAPLLANVMCCPQL 104


>At1g61900.1 68414.m06983 expressed protein contains similarity to
           glutamic acid/alanine-rich protein GI:6707830 from
           [Trypanosoma congolense]
          Length = 433

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 142 VQTRTRSQCWMVFTWISAAMLCCPPL 167
           +QT T   CW VF  + A ++CCP L
Sbjct: 80  IQT-TSHNCWTVFAPLLANVMCCPQL 104


>At2g35330.1 68415.m04332 zinc finger (C3HC4-type RING finger)
           protein-related contains weak hit to Pfam profile:
           PF00097 zinc finger, C3HC4 type (RING finger); weak
           similarity to RING finger protein 8 (Swiss-Prot:O76064)
           [Homo sapiens]
          Length = 738

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 10/17 (58%), Positives = 14/17 (82%)

Query: 170 YKKDANFDKETFICMLD 186
           Y+K+AN+D+E  ICM D
Sbjct: 674 YEKEANYDRECLICMKD 690


>At3g05010.1 68416.m00544 transmembrane protein, putative similar to
           GB:AAB61079; contains weak similarity to the SAPB
           protein (TR:E236624) [Arabidopsis thaliana]; similar to
           seven transmembrane domain orphan receptor (GI:4321619)
           [Mus musculus] contains 7 transmembrane domains;
          Length = 300

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 247 HWMSFVLVSVFWLSWAPYAGVRMYEYVTNQEIKIPMLHFGMVWL-GIMNSFW 297
           H    VL S+ ++++  Y   +    ++N+   I + ++G +WL  ++N  W
Sbjct: 40  HNTVLVLASILFVAYLAYEAKKSLSKLSNRRSYIMIAYYGFLWLVSLLNLAW 91


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.328    0.139    0.453 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,281,076
Number of Sequences: 28952
Number of extensions: 290628
Number of successful extensions: 693
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 689
Number of HSP's gapped (non-prelim): 6
length of query: 339
length of database: 12,070,560
effective HSP length: 82
effective length of query: 257
effective length of database: 9,696,496
effective search space: 2491999472
effective search space used: 2491999472
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 60 (28.3 bits)