GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000696-TA|BGIBMGA000696-PA|IPR001849|Pleckstrin-like,
IPR001895|Guanine-nucleotide dissociation stimulator CDC25,
IPR008937|Ras guanine nucleotide exchange factor
         (576 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284...    33   0.82 
01_05_0080 - 17957276-17957676,17957810-17957921,17958001-179581...    33   0.82 
12_02_0262 - 16545875-16546487,16549570-16550216                       32   1.4  
08_01_0130 + 1040696-1041049,1042135-1042275,1042422-1042673,104...    31   3.3  
12_01_0672 + 5731288-5731356,5732032-5732117,5732634-5732724,573...    29   7.6  
11_01_0017 - 129261-129335,129352-129426,129565-129645,129929-13...    29   7.6  

>06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491,
            27829243-27829449,27829611-27829704,27829806-27829870,
            27829946-27830398,27830467-27830760,27830837-27831295,
            27831367-27831588,27831755-27831968,27832039-27832494,
            27833280-27833389,27833468-27833644,27833758-27833979,
            27834048-27834167,27834274-27834383,27834552-27834607,
            27835252-27835440,27835602-27835775,27836066-27836281,
            27837066-27837106,27837971-27837986,27838330-27838415,
            27838737-27838910,27839093-27839149,27839720-27840064,
            27840175-27840216,27840377-27840496,27840575-27840724,
            27840830-27841534,27841609-27841954,27842978-27843080,
            27844817-27844860,27845905-27846101,27846322-27846344,
            27846802-27847122,27847406-27847579,27847843-27848047,
            27848817-27848880,27850097-27850278,27850291-27850350,
            27850688-27850748,27851249-27851313,27851491-27851569,
            27851656-27852021,27852442-27852790,27852887-27852989,
            27853103-27853373,27854296-27854405,27854515-27854652
          Length = 3364

 Score = 32.7 bits (71), Expect = 0.82
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 6/59 (10%)

Query: 394  GSNIFGKSHTEDKMDEKTPAGSVNLLD---DTLLESPSSVACAKMSQSLPHS---NITK 446
            GS++F K    +  D K+  GSV  LD   D ++++P+ V   K S  + H    NITK
Sbjct: 2614 GSSVFSKFKEIEDSDCKSDLGSVERLDGGRDYVIKTPNGVLMQKQSNKIKHHRRWNITK 2672


>01_05_0080 -
           17957276-17957676,17957810-17957921,17958001-17958126,
           17958199-17958331,17960069-17960193,17960314-17960409,
           17960430-17960621,17960694-17960800,17961318-17961426,
           17961538-17961624,17963017-17963103,17964254-17964379
          Length = 566

 Score = 32.7 bits (71), Expect = 0.82
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 216 LSKKDKQQFDKLAELFGETDNWTALREYLKSISL-----PCIPYLGIFLTDLVYI 265
           LS++ +  FDK+AEL       +  RE L S+S      P +PY   F+ D V I
Sbjct: 167 LSRELQMYFDKIAELTMSRSETSVFREALVSLSRDSGLHPLVPYFSYFIADEVVI 221


>12_02_0262 - 16545875-16546487,16549570-16550216
          Length = 419

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 21/104 (20%), Positives = 43/104 (41%)

Query: 303 VANFLNSVRYIEELQKFVEDDQYKLSLKLEPPSPVGSCAGSKESVKETVLQGNVTTFNIS 362
           +  F +  R + E    +E+ Q  + L+ E  S   +   + E+     +         +
Sbjct: 281 IGEFRSEERLMLEQALLMEEKQAMMGLRAEIESREKAGREAAEAKMRMAMAEQARAEAQA 340

Query: 363 PSHKLGSGSLRLQGTSHQGKFIPTHRKCRSLGSNIFGKSHTEDK 406
            S  +G G LR    + QG+  P+H   +  G + +G +  +D+
Sbjct: 341 HSEMIGHGPLRAHAAASQGEDGPSHEMMQEQGEDGWGNAQRDDE 384


>08_01_0130 +
           1040696-1041049,1042135-1042275,1042422-1042673,
           1043797-1043904,1044289-1044593,1044720-1044841,
           1044979-1045225,1045308-1045365,1045414-1045530,
           1045718-1045753,1046492-1046554,1046958-1047047,
           1047241-1047399,1047475-1047596,1048145-1048217,
           1048307-1048375
          Length = 771

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 15/39 (38%), Positives = 25/39 (64%)

Query: 182 AKKLHELNNLHSLFAVISALHSASIYRLTKTWACLSKKD 220
           A+K    NNL  +  V+S+++  +I RLT+T+  LS +D
Sbjct: 626 AEKFQSDNNLGLVKQVLSSMYKRNIQRLTQTYLTLSLED 664


>12_01_0672 +
           5731288-5731356,5732032-5732117,5732634-5732724,
           5732886-5732935,5733339-5733408,5733508-5733617,
           5733943-5734463,5734856-5734949,5735095-5735225,
           5735241-5736274,5736383-5736457,5736615-5737104,
           5737375-5738009,5738166-5738378
          Length = 1222

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 4/86 (4%)

Query: 266 DIAHPAGSPHRVT---KMNIVLKALERYQSSEYEIAPLPHVANFLNSVRYIEELQKFVED 322
           +I HPA          ++N++  + +R  SS  + A +     FL S + + ++   VE 
Sbjct: 384 EIGHPAKRARSEVPEQEINMIGNSDDRTTSSAAK-ATIGDTPEFLRSDKSVPDIMSIVEG 442

Query: 323 DQYKLSLKLEPPSPVGSCAGSKESVK 348
           + Y      E   PVG  AG K  ++
Sbjct: 443 EDYSRDPGRELARPVGRRAGDKPGLR 468


>11_01_0017 -
           129261-129335,129352-129426,129565-129645,129929-130040,
           130131-131177,131256-131347,131773-131943,132150-132253,
           132367-132501,132583-132724,132803-133059,133126-133337,
           133417-133454
          Length = 846

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 342 GSKESVKETVLQGNVTTFNISPSHKLGSGS----LRLQGTSHQGKFIPTHRKCRSLGSNI 397
           GS+     +   G  +TF  SP  + G  S    L+  G + +GKF        + G  +
Sbjct: 96  GSQVKATRSPASGFSSTF--SPLSRFGKSSNTSVLKEVGENSRGKFPSKCLSAENKGRKL 153

Query: 398 FGKSHTEDKMDEKTPAGS 415
           F  S   ++ + K PAG+
Sbjct: 154 FASSKASEQDERKAPAGT 171


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.132    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,818,099
Number of Sequences: 37544
Number of extensions: 769838
Number of successful extensions: 1558
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1555
Number of HSP's gapped (non-prelim): 8
length of query: 576
length of database: 14,793,348
effective HSP length: 86
effective length of query: 490
effective length of database: 11,564,564
effective search space: 5666636360
effective search space used: 5666636360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)