Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000695-TA|BGIBMGA000695-PA|IPR001395|Aldo/keto reductase
         (262 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    25   0.77 
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    22   5.4  

>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 12/36 (33%), Positives = 16/36 (44%)

Query: 149 HPYYTQSSLYKFCKQHHITLQAYCSFGGTSCSNNSL 184
           +PY   SS+YK     H+   A       SC N +L
Sbjct: 180 NPYCFNSSVYKVFPVEHLLFIANAFITSQSCENATL 215


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/46 (21%), Positives = 19/46 (41%)

Query: 189 VVVSTALKLEVTPAQVLLVWALQQDVAVIPKAVHPEHIKENRSLNF 234
           V V+    +  TP ++   W +      I + + P H  E +  +F
Sbjct: 93  VAVTVLAGILTTPFKLPYFWKMLTGFGKIEQVLPPHHAPEEKKRSF 138


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.133    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,895
Number of Sequences: 317
Number of extensions: 2707
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 262
length of database: 114,650
effective HSP length: 56
effective length of query: 206
effective length of database: 96,898
effective search space: 19960988
effective search space used: 19960988
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)