GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000694-TA|BGIBMGA000694-PA|IPR009053|Prefoldin,
IPR002777|Prefoldin beta-like
         (138 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    24   0.43 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   0.76 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   0.76 
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    23   1.3  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   2.3  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    22   2.3  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    22   2.3  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    22   2.3  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   2.3  
AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax pr...    22   2.3  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    22   2.3  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   3.1  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   4.0  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   4.0  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   5.4  
X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       20   7.1  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    20   7.1  
AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax prot...    20   7.1  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    20   7.1  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    20   7.1  

>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 24.2 bits (50), Expect = 0.43
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 5   VDLELKQAFVDLQVLMIETKKTIENIDHQL 34
           V L   Q  + +QV++I TK TIE + + +
Sbjct: 220 VALTTLQLLIYIQVIVIGTKNTIETVAYSV 249


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 0.76
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 97  RKVCLNHTLNESESNIRDLIQQKRMK 122
           R++ + HTL  SE  I+   Q +RMK
Sbjct: 262 RRIEIAHTLVLSERQIKIWFQNRRMK 287


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 0.76
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 97  RKVCLNHTLNESESNIRDLIQQKRMK 122
           R++ + HTL  SE  I+   Q +RMK
Sbjct: 262 RRIEIAHTLVLSERQIKIWFQNRRMK 287


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 48  QREIDVLPPGTKTYESMARMFVQSDLE 74
           + E  V+P G++T   + R +  SDLE
Sbjct: 163 REEATVVPEGSRTPIEIPRDYTASDLE 189


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 97  RKVCLNHTLNESESNIRDLIQQKRMK-NENQPAAESNPIP 135
           R++ + H L  +E  I+   Q +RMK  +    A  N +P
Sbjct: 249 RRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMNIVP 288


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 97  RKVCLNHTLNESESNIRDLIQQKRMK-NENQPAAESNPIP 135
           R++ + H L  +E  I+   Q +RMK  +    A  N +P
Sbjct: 249 RRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMNIVP 288


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 97  RKVCLNHTLNESESNIRDLIQQKRMK-NENQPAAESNPIP 135
           R++ + H L  +E  I+   Q +RMK  +    A  N +P
Sbjct: 249 RRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMNIVP 288


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 97  RKVCLNHTLNESESNIRDLIQQKRMK-NENQPAAESNPIP 135
           R++ + H L  +E  I+   Q +RMK  +    A  N +P
Sbjct: 205 RRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMNIVP 244


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 97  RKVCLNHTLNESESNIRDLIQQKRMK-NENQPAAESNPIP 135
           R++ + H L  +E  I+   Q +RMK  +    A  N +P
Sbjct: 249 RRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMNIVP 288


>AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax
           protein.
          Length = 100

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 97  RKVCLNHTLNESESNIRDLIQQKRMK-NENQPAAESNPIP 135
           R++ + H L  +E  I+   Q +RMK  +    A  N +P
Sbjct: 37  RRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMNIVP 76


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 97  RKVCLNHTLNESESNIRDLIQQKRMK-NENQPAAESNPIP 135
           R++ + H L  +E  I+   Q +RMK  +    A  N +P
Sbjct: 249 RRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMNIVP 288


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 101 LNHTLNESESNIRDLIQQKRMKNE 124
           L   LN +E  ++   Q +RMKN+
Sbjct: 276 LARNLNLTERQVKIWFQNRRMKNK 299


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 97  RKVCLNHTLNESESNIRDLIQQKRM--KNENQPAAE 130
           R++ + H L  +E  I+   Q +RM  K EN+   E
Sbjct: 271 RRIEIAHALCLTERQIKIWFQNRRMKWKKENKTKGE 306


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 97  RKVCLNHTLNESESNIRDLIQQKRM--KNENQPAAE 130
           R++ + H L  +E  I+   Q +RM  K EN+   E
Sbjct: 273 RRIEIAHALCLTERQIKIWFQNRRMKWKKENKTKGE 308


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 8/27 (29%), Positives = 16/27 (59%)

Query: 48  QREIDVLPPGTKTYESMARMFVQSDLE 74
           + E  ++P G++T   + + F  SDL+
Sbjct: 163 REEAHIVPEGSRTPIEIPQDFTASDLD 189


>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 97  RKVCLNHTLNESESNIRDLIQQKRMK 122
           R++ + H L  +E  I+   Q +RMK
Sbjct: 35  RRIEIAHALCLTERQIKIWFQNRRMK 60


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 97  RKVCLNHTLNESESNIRDLIQQKRMK 122
           R++ + H L  +E  I+   Q +RMK
Sbjct: 252 RRIEMAHALCLTERQIKIWFQNRRMK 277


>AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax
           protein.
          Length = 96

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 97  RKVCLNHTLNESESNIRDLIQQKRMK 122
           R++ + H L  +E  I+   Q +RMK
Sbjct: 34  RRIEMAHALCLTERQIKIWFQNRRMK 59


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 97  RKVCLNHTLNESESNIRDLIQQKRMK 122
           R++ + H L  +E  I+   Q +RMK
Sbjct: 186 RRIEIAHALCLTERQIKIWFQNRRMK 211


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 97  RKVCLNHTLNESESNIRDLIQQKRMK 122
           R++ + H L  +E  I+   Q +RMK
Sbjct: 245 RRIEIAHALCLTERQIKIWFQNRRMK 270


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.128    0.344 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,908
Number of Sequences: 317
Number of extensions: 1027
Number of successful extensions: 20
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of query: 138
length of database: 114,650
effective HSP length: 51
effective length of query: 87
effective length of database: 98,483
effective search space:  8568021
effective search space used:  8568021
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.6 bits)
S2: 39 (19.8 bits)