Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000694-TA|BGIBMGA000694-PA|IPR009053|Prefoldin,
IPR002777|Prefoldin beta-like
(138 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g07340.1 68415.m00841 prefoldin-related KE2 family protein co... 53 6e-08
At2g07340.2 68415.m00842 prefoldin-related KE2 family protein co... 48 2e-06
At5g20580.2 68418.m02444 expressed protein predicted protein, Ar... 32 0.12
At5g20580.1 68418.m02443 expressed protein predicted protein, Ar... 32 0.12
At1g29990.1 68414.m03668 prefoldin, putative similar to Swiss-Pr... 32 0.12
At5g03660.1 68418.m00325 expressed protein low similarity to out... 30 0.49
At3g09980.1 68416.m01198 expressed protein contains Pfam profile... 30 0.65
At2g25530.1 68415.m03056 AFG1-like ATPase family protein contain... 29 1.1
At1g24260.2 68414.m03059 MADS-box protein (AGL9) strongly simila... 29 1.1
At1g24260.1 68414.m03058 MADS-box protein (AGL9) strongly simila... 29 1.1
At5g15800.1 68418.m01848 developmental protein SEPALLATA1 / flor... 29 1.5
At3g10880.1 68416.m01310 hypothetical protein 29 1.5
At4g13670.1 68417.m02125 peptidoglycan-binding domain-containing... 28 2.0
At1g58110.1 68414.m06587 bZIP family transcription factor simila... 28 2.0
At5g11260.1 68418.m01315 bZIP protein HY5 (HY5) identical to HY5... 28 2.6
At4g18010.2 68417.m02680 inositol polyphosphate 5-phosphatase II... 27 3.5
At4g18010.1 68417.m02679 inositol polyphosphate 5-phosphatase II... 27 3.5
At3g52920.2 68416.m05833 expressed protein weak similarity to en... 27 3.5
At3g52920.1 68416.m05832 expressed protein weak similarity to en... 27 3.5
At3g28520.1 68416.m03562 AAA-type ATPase family protein contains... 27 3.5
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains... 27 3.5
At3g10340.1 68416.m01240 phenylalanine ammonia-lyase, putative s... 27 3.5
At5g48600.1 68418.m06011 structural maintenance of chromosomes (... 27 4.6
At5g45760.2 68418.m05626 transducin family protein / WD-40 repea... 27 4.6
At5g45760.1 68418.m05625 transducin family protein / WD-40 repea... 27 4.6
At3g52090.1 68416.m05716 DNA-directed RNA polymerase II 13.6 kDa... 27 4.6
At1g01660.1 68414.m00084 U-box domain-containing protein 27 4.6
At4g12750.1 68417.m02002 expressed protein 27 6.0
At3g53680.1 68416.m05928 PHD finger transcription factor, putati... 27 6.0
At3g22790.1 68416.m02873 kinase interacting family protein simil... 27 6.0
At2g36410.2 68415.m04470 expressed protein contains Pfam profile... 27 6.0
At2g36410.1 68415.m04469 expressed protein contains Pfam profile... 27 6.0
At2g27740.1 68415.m03362 expressed protein contains Pfam profile... 27 6.0
At1g27030.1 68414.m03295 expressed protein 27 6.0
At1g12150.1 68414.m01407 expressed protein contains Pfam profile... 27 6.0
At5g06560.1 68418.m00740 expressed protein contains Pfam profile... 26 8.0
At3g62080.1 68416.m06975 SNF7 family protein contains Pfam domai... 26 8.0
At3g25840.1 68416.m03219 protein kinase family protein contains ... 26 8.0
At2g37040.1 68415.m04544 phenylalanine ammonia-lyase 1 (PAL1) ne... 26 8.0
At2g06140.1 68415.m00675 hypothetical protein 26 8.0
At1g08400.1 68414.m00929 chromosome structural maintenance prote... 26 8.0
>At2g07340.1 68415.m00841 prefoldin-related KE2 family protein
contains similarity to Swiss-Prot:O60925 prefoldin
subunit 1 [Homo sapiens]; contains Pfam domain, PF01920:
KE2 family protein
Length = 128
Score = 53.2 bits (122), Expect = 6e-08
Identities = 32/114 (28%), Positives = 55/114 (48%)
Query: 6 DLELKQAFVDLQVLMIETKKTIENIDHQLAVLGRMQMHTNLTQREIDVLPPGTKTYESMA 65
D + AF+++Q MIE ++ + +Q+ + LT E+ LP T TY+S+
Sbjct: 3 DEATRAAFMEIQASMIELTGKLKQVQNQMRNKEGDRKRAFLTLEELRPLPEETNTYKSIG 62
Query: 66 RMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQK 119
R FV ++ QK + + L K L + E E+N+R+L+QQ+
Sbjct: 63 RTFVLEPKTVLEGEQEQKLKDSEAAVASLQTSKEYLEKQVAEVENNLRELLQQE 116
>At2g07340.2 68415.m00842 prefoldin-related KE2 family protein
contains similarity to Swiss-Prot:O60925 prefoldin
subunit 1 [Homo sapiens]; contains Pfam domain, PF01920:
KE2 family protein
Length = 127
Score = 48.0 bits (109), Expect = 2e-06
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 6 DLELKQAFVDLQVLMIETKKTIENIDHQLAVLGRMQMHTNLTQREIDVLPPGTKTYESMA 65
D + AF+++Q MIE ++ + +Q+ + LT E+ LP T TY+S+
Sbjct: 3 DEATRAAFMEIQASMIELTGKLKQVQNQMRNKEGDRKRAFLTLEELRPLPEETNTYKSIG 62
Query: 66 RMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQK 119
+ FV ++ QK + + L K L + E E+N+R+L+QQ+
Sbjct: 63 K-FVLEPKTVLEGEQEQKLKDSEAAVASLQTSKEYLEKQVAEVENNLRELLQQE 115
>At5g20580.2 68418.m02444 expressed protein predicted protein,
Arabidopsis thaliana
Length = 348
Score = 32.3 bits (70), Expect = 0.12
Identities = 20/83 (24%), Positives = 36/83 (43%)
Query: 31 DHQLAVLGRMQMHTNLTQREIDVLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLISR 90
D Q+A+L + + + EI L YE+ Q DL H+ Q+ TL +
Sbjct: 208 DQQMALLQYQRENLHYLSEEILRLQESLSKYETNGSSTPQVDLAHLVATRDQELRTLSAE 267
Query: 91 IDDLNNRKVCLNHTLNESESNIR 113
+D L++ ++E + I+
Sbjct: 268 VDQLHSELNLARSLISERDREIQ 290
>At5g20580.1 68418.m02443 expressed protein predicted protein,
Arabidopsis thaliana
Length = 348
Score = 32.3 bits (70), Expect = 0.12
Identities = 20/83 (24%), Positives = 36/83 (43%)
Query: 31 DHQLAVLGRMQMHTNLTQREIDVLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLISR 90
D Q+A+L + + + EI L YE+ Q DL H+ Q+ TL +
Sbjct: 208 DQQMALLQYQRENLHYLSEEILRLQESLSKYETNGSSTPQVDLAHLVATRDQELRTLSAE 267
Query: 91 IDDLNNRKVCLNHTLNESESNIR 113
+D L++ ++E + I+
Sbjct: 268 VDQLHSELNLARSLISERDREIQ 290
>At1g29990.1 68414.m03668 prefoldin, putative similar to
Swiss-Prot:O15212 prefoldin subunit 6 (Protein Ke2)
[Homo sapiens]
Length = 129
Score = 32.3 bits (70), Expect = 0.12
Identities = 21/102 (20%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 31 DHQLAVLGRMQMHTN-LTQREIDVLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLIS 89
+HQL +Q+ N L +E+D+L Y+ + + V+ DL N+R++ + +
Sbjct: 30 NHQLRKKYTIQLGENELVLKELDLLEEDANVYKLIGPVLVKQDLAEANANVRKRIEYISA 89
Query: 90 RIDDLNNRKVCLNHTLNESESNIRDLIQQKRMKNENQPAAES 131
+ L+ + + E ++N R+ I + + + + A ++
Sbjct: 90 ELKRLD----AILQDMEEKQNNKRETIMKLQQRLQTIQAGKA 127
>At5g03660.1 68418.m00325 expressed protein low similarity to outer
surface protein F [Borrelia burgdorferi] GI:466482;
contains Pfam profile PF04949: Family of unknown
function (DUF662)
Length = 173
Score = 30.3 bits (65), Expect = 0.49
Identities = 14/65 (21%), Positives = 32/65 (49%)
Query: 62 ESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKRM 121
ES ++ +LE +R++ + +ID L+ L +T+ + E+ +D ++
Sbjct: 75 ESKRLAMIREELEGFADPMRKEVTMVRKKIDSLDKELKPLGNTVQKKETEYKDALEAFNE 134
Query: 122 KNENQ 126
KN+ +
Sbjct: 135 KNKEK 139
>At3g09980.1 68416.m01198 expressed protein contains Pfam profile
PF04949: Family of unknown function (DUF662)
Length = 178
Score = 29.9 bits (64), Expect = 0.65
Identities = 13/65 (20%), Positives = 31/65 (47%)
Query: 62 ESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKRM 121
E+ ++ +LE + +R++ + +ID +N L HT+ + E ++ ++
Sbjct: 81 ETKRLALIREELEGLADPMRKEVAMVRKKIDSVNKELKPLGHTVQKKEREYKEALEAFNE 140
Query: 122 KNENQ 126
KN +
Sbjct: 141 KNREK 145
>At2g25530.1 68415.m03056 AFG1-like ATPase family protein contains
Pfam profile: PF03969 AFG1-like ATPase
Length = 655
Score = 29.1 bits (62), Expect = 1.1
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 55 PPGTKTYESMARMFVQ---SDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESN 111
P G Y ++A+ + SD+ + +R K I+ +D+L N CL ++ +E+
Sbjct: 507 PVGAADYIAVAKNYHTIFISDIPAMSMEIRDKARRFITLVDELYNHHCCL---VSSAETA 563
Query: 112 IRDLIQ 117
I +L Q
Sbjct: 564 IDELFQ 569
>At1g24260.2 68414.m03059 MADS-box protein (AGL9) strongly similar
to GB:O22456, MADS-box protein, Location of EST
gb|H37053
Length = 251
Score = 29.1 bits (62), Expect = 1.1
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 47 TQREI---DVLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNH 103
TQR + D+ P TK ES+ R S +KQ +T ++ +++DL +++ L
Sbjct: 111 TQRNLLGEDLGPLSTKELESLERQLDSS----LKQIRALRTQFMLDQLNDLQSKERMLTE 166
Query: 104 TLNESESNIRDLIQQKRMKNENQ 126
T + D Q N NQ
Sbjct: 167 TNKTLRLRLADGYQMPLQLNPNQ 189
>At1g24260.1 68414.m03058 MADS-box protein (AGL9) strongly similar
to GB:O22456, MADS-box protein, Location of EST
gb|H37053
Length = 250
Score = 29.1 bits (62), Expect = 1.1
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 47 TQREI---DVLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNH 103
TQR + D+ P TK ES+ R S +KQ +T ++ +++DL +++ L
Sbjct: 110 TQRNLLGEDLGPLSTKELESLERQLDSS----LKQIRALRTQFMLDQLNDLQSKERMLTE 165
Query: 104 TLNESESNIRDLIQQKRMKNENQ 126
T + D Q N NQ
Sbjct: 166 TNKTLRLRLADGYQMPLQLNPNQ 188
>At5g15800.1 68418.m01848 developmental protein SEPALLATA1 / floral
homeotic protein (AGL2) (SEP1) identical to
developmental protein SEPALLATA1 / floral homeotic
protein (AGL2 / SEP1) SP:P29382 from [Arabidopsis
thaliana]
Length = 251
Score = 28.7 bits (61), Expect = 1.5
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 8/119 (6%)
Query: 1 MAKTVDLELKQAFVDLQVLMIETKKTIENIDHQLAVLGRMQMHTNLTQREI---DVLPPG 57
M KT+D K ++ ++V K+ + L + GR + + QR + D+ P
Sbjct: 63 MLKTLDRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYE-NLQRQQRNLLGEDLGPLN 121
Query: 58 TKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLI 116
+K E + R S +KQ KT ++ ++ DL N++ L T + D+I
Sbjct: 122 SKELEQLERQLDGS----LKQVRSIKTQYMLDQLSDLQNKEQMLLETNRALAMKLDDMI 176
>At3g10880.1 68416.m01310 hypothetical protein
Length = 278
Score = 28.7 bits (61), Expect = 1.5
Identities = 26/126 (20%), Positives = 63/126 (50%), Gaps = 4/126 (3%)
Query: 2 AKTVDLELKQAFV-DLQVLMIETKKTIENIDHQLAVLGRMQMHTNLTQREIDVLPPGTKT 60
A+ + +E ++ +V DL+ + ++ IE ++ +L + + ++ + K
Sbjct: 118 ARNIAIETEKRYVVDLESKLSDSVYKIEKLESELDEVKECLGVSEAEVSKLMEMLSECKN 177
Query: 61 YESMARMFVQSDL-EHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNI-RDLIQQ 118
+S + DL + ++ LR + I ++++ N+ +CLN T +SES ++++++
Sbjct: 178 EKSKLQTDNADDLLDSLRAELRSR-EIQIEQMEEYLNQVLCLNETEIKSESETDKNIVEE 236
Query: 119 KRMKNE 124
R K E
Sbjct: 237 LRAKVE 242
>At4g13670.1 68417.m02125 peptidoglycan-binding domain-containing
protein similar to spore cortex-lytic enzyme prepeptide
(GI:1644192) [Bacillus cereus]; contains Pfam PF01471:
Putative peptidoglycan binding domain; contains Pfam
PF00684 : DnaJ central domain (4 repeats)
Length = 387
Score = 28.3 bits (60), Expect = 2.0
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 77 KQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKRMKN 123
+++L Q+ + L RI L +R L +++ ++ SNI L+Q + KN
Sbjct: 79 RESLLQEISDLQLRIQSLESRNSQLGNSIPDTISNIAALLQVLKEKN 125
>At1g58110.1 68414.m06587 bZIP family transcription factor similar
to bZIP transcriptional activator RSG GI:8777512 from
[Nicotiana tabacum]; contains PFAM profile: bZIP
transcription factor PF00170
Length = 374
Score = 28.3 bits (60), Expect = 2.0
Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 5/121 (4%)
Query: 15 DLQVLMIETKKTIENIDHQLAVLGRMQMHTNLTQ--REIDVLPPGTKTYESMARMF-VQ- 70
D V+ E K E H +L + ++N + E D + + +R+ +Q
Sbjct: 194 DATVISSERKNYAEPFSHDPKMLSSEENNSNPSPVTYEADNTKRAKQQFAQRSRVRKLQY 253
Query: 71 -SDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKRMKNENQPAA 129
S+LE Q L+ + + + + +D LN R + L+ + + + Q+K +K Q
Sbjct: 254 ISELERNVQTLQAEGSKVSAELDFLNQRNLILSMENKALKKRLESIAQEKLIKQLEQEVL 313
Query: 130 E 130
E
Sbjct: 314 E 314
>At5g11260.1 68418.m01315 bZIP protein HY5 (HY5) identical to HY5
protein GI:2251085 from [Arabidopsis thaliana]
Length = 168
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 71 SDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIR 113
S+LE+ ++L K + L R+ L N L H L + N R
Sbjct: 114 SELENRVKDLENKNSELEERLSTLQNENQMLRHILKNTTGNKR 156
>At4g18010.2 68417.m02680 inositol polyphosphate 5-phosphatase II
(IP5PII) nearly identical to inositol polyphosphate
5-phosphatase II [Arabidopsis thaliana] GI:10444263
isoform contains an AT-acceptor splice site at intron 6
Length = 613
Score = 27.5 bits (58), Expect = 3.5
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Query: 101 LNHTLNESESNIRDLIQQKR---MKNENQ 126
LN+ LN S+ +R L+ QKR +KN +Q
Sbjct: 470 LNYRLNMSDGEVRKLVSQKRWDELKNSDQ 498
>At4g18010.1 68417.m02679 inositol polyphosphate 5-phosphatase II
(IP5PII) nearly identical to inositol polyphosphate
5-phosphatase II [Arabidopsis thaliana] GI:10444263
isoform contains an AT-acceptor splice site at intron 6
Length = 646
Score = 27.5 bits (58), Expect = 3.5
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Query: 101 LNHTLNESESNIRDLIQQKR---MKNENQ 126
LN+ LN S+ +R L+ QKR +KN +Q
Sbjct: 503 LNYRLNMSDGEVRKLVSQKRWDELKNSDQ 531
>At3g52920.2 68416.m05833 expressed protein weak similarity to
enterophilin-2L [Cavia porcellus] GI:12718845; contains
Pfam profile PF04949: Family of unknown function
(DUF662)
Length = 177
Score = 27.5 bits (58), Expect = 3.5
Identities = 12/58 (20%), Positives = 28/58 (48%)
Query: 69 VQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKRMKNENQ 126
++ +LE + +R++ N + +ID +N L T+ + E ++ + KN +
Sbjct: 74 IREELETMADPMRKEVNWVRKKIDSVNKELKPLGSTVQKKEREYKEALDTFNEKNREK 131
>At3g52920.1 68416.m05832 expressed protein weak similarity to
enterophilin-2L [Cavia porcellus] GI:12718845; contains
Pfam profile PF04949: Family of unknown function
(DUF662)
Length = 180
Score = 27.5 bits (58), Expect = 3.5
Identities = 12/58 (20%), Positives = 28/58 (48%)
Query: 69 VQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKRMKNENQ 126
++ +LE + +R++ N + +ID +N L T+ + E ++ + KN +
Sbjct: 74 IREELETMADPMRKEVNWVRKKIDSVNKELKPLGSTVQKKEREYKEALDTFNEKNREK 131
>At3g28520.1 68416.m03562 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 478
Score = 27.5 bits (58), Expect = 3.5
Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 7/118 (5%)
Query: 19 LMIETKKTIENIDHQLAVLGRMQMHTNLTQREIDVLPPGTKTYESMARMFVQSD----LE 74
++I T ++N+D L GRM H ++ + K Y + + LE
Sbjct: 349 IIIFTTNFVDNLDPALIRRGRMDYHIEMSYCRFEAFKVLAKNYLENESHDLYGEIGRLLE 408
Query: 75 HIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKRMKNENQPAAESN 132
+ + L+ + D+ ++ +C + E + I+++ KN+ + AE N
Sbjct: 409 EVDVSPADVAENLMPKSDE-DDADICFRRLVKSLEEEKKKKIEKEARKNKKK--AEDN 463
>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 530
Score = 27.5 bits (58), Expect = 3.5
Identities = 22/117 (18%), Positives = 49/117 (41%), Gaps = 8/117 (6%)
Query: 19 LMIETKKTIENIDHQLAVLGRMQMHTNLTQREIDVLPPGTKTYESMAR--MF--VQSDLE 74
+++ T ++ +D L GRM H ++ + + K Y + ++ ++ LE
Sbjct: 365 IIVFTTNFVDKLDPALIRRGRMDNHIEMSYCKFEAFKVLAKNYLEIETHDLYGEIERKLE 424
Query: 75 HIKQNLRQKTNTLISRIDDLNNRKVCLNH---TLNESESNIRDLIQQKRMKNENQPA 128
+ TL+ + D+ + +C+ TL E + R L +++ K + A
Sbjct: 425 ETDMSPADVAETLMPKSDE-EDADICIKRLVKTLEEEKEKARKLAEEEEKKKAEKEA 480
>At3g10340.1 68416.m01240 phenylalanine ammonia-lyase, putative
similar to phenylalanine ammonia-lyase GB:S48726
[Petroselinum crispum]
Length = 707
Score = 27.5 bits (58), Expect = 3.5
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 47 TQREIDVLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLN 106
T +D+L + TY + + DL H+++NL++ + +S++ V N L+
Sbjct: 492 TAEAVDILKLMSTTY--LVALCQAVDLRHLEENLKKAVKSAVSQVAK-RVLTVGANGELH 548
Query: 107 ESESNIRDLIQ 117
S RD++Q
Sbjct: 549 PSRFTERDVLQ 559
>At5g48600.1 68418.m06011 structural maintenance of chromosomes
(SMC) family protein similar to SP|P50532 Chromosome
assembly protein XCAP-C {Xenopus laevis}; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1241
Score = 27.1 bits (57), Expect = 4.6
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 84 TNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKRMKNEN 125
TN + +ID+LN + TLNES S + +++ + +N
Sbjct: 202 TNKYVEKIDELNKQL----ETLNESRSGVVQMVKLAEKERDN 239
>At5g45760.2 68418.m05626 transducin family protein / WD-40 repeat
family protein
Length = 334
Score = 27.1 bits (57), Expect = 4.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 71 SDLEHIKQNLRQKTNTLISRIDDLNNRKVC 100
SDL H+ NL +K N L + D N VC
Sbjct: 293 SDLLHLNINLSKKVNWLCTNQSDSENLVVC 322
>At5g45760.1 68418.m05625 transducin family protein / WD-40 repeat
family protein
Length = 360
Score = 27.1 bits (57), Expect = 4.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 71 SDLEHIKQNLRQKTNTLISRIDDLNNRKVC 100
SDL H+ NL +K N L + D N VC
Sbjct: 319 SDLLHLNINLSKKVNWLCTNQSDSENLVVC 348
>At3g52090.1 68416.m05716 DNA-directed RNA polymerase II 13.6 kDa
subunit (RPB13.6) identical to SP|Q38859 DNA-directed
RNA polymerase II 13.6 kDa polypeptide (EC 2.7.7.6)
{Arabidopsis thaliana}
Length = 116
Score = 27.1 bits (57), Expect = 4.6
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 26 TIENIDHQLAVLGRMQMHTNLTQREIDVLPPGTKTYESMARMFVQSDLEHIKQNLRQKTN 85
T+E DH + + RMQ+H + P Y+ + R+ S + Q Q N
Sbjct: 34 TVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVRIHTTSQSSPM-QAYNQAIN 92
Query: 86 TLISRIDDLNNR 97
L +D L N+
Sbjct: 93 DLDKELDYLKNQ 104
>At1g01660.1 68414.m00084 U-box domain-containing protein
Length = 568
Score = 27.1 bits (57), Expect = 4.6
Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 67 MFVQSDLEHI--KQNLRQKTNTLISRIDDLNNRKVCLNH 103
M + +D+ H+ K ++R+ +TL+ + +L +KVC+ H
Sbjct: 5 MAMGNDVVHVAVKSDVRESRSTLLWALRNLGAKKVCILH 43
>At4g12750.1 68417.m02002 expressed protein
Length = 1108
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 64 MARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESN 111
++R QS+ H +R+ +++ +S ID NN +CLN N+ S+
Sbjct: 827 LSRQVTQSETAHFTDIVREDSSSPVSDID--NN--LCLNEIANDQFSS 870
>At3g53680.1 68416.m05928 PHD finger transcription factor, putative
predicted proteins, Arabidopsis thaliana
Length = 839
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 93 DLNNRKVCLNH-TLNESESNIRDLIQQKRMKNENQPAAESNPIPS 136
DL ++C L+E E + Q K N++ + SNP+PS
Sbjct: 18 DLKRDRLCFEQDNLDEEELYSSNKRQTKEPSNDDMKSEISNPVPS 62
>At3g22790.1 68416.m02873 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 1694
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 73 LEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKRMKN 123
L++ K L ++ +LIS+++ + + L E E DL ++K+ KN
Sbjct: 714 LKNDKAELIKERESLISQLNAVKEKLGVLEKKFTELEGKYADLQREKQFKN 764
>At2g36410.2 68415.m04470 expressed protein contains Pfam profile
PF04949: Family of unknown function (DUF662)
Length = 192
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/58 (18%), Positives = 28/58 (48%)
Query: 69 VQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKRMKNENQ 126
++ +LE + +R++ + + +ID +N L T+ + E ++ + KN +
Sbjct: 103 IREELESMADPMRKEVSVVRKKIDSVNKELKPLGSTVQKKEREYKEALDTFNEKNREK 160
>At2g36410.1 68415.m04469 expressed protein contains Pfam profile
PF04949: Family of unknown function (DUF662)
Length = 195
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/58 (18%), Positives = 28/58 (48%)
Query: 69 VQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKRMKNENQ 126
++ +LE + +R++ + + +ID +N L T+ + E ++ + KN +
Sbjct: 103 IREELESMADPMRKEVSVVRKKIDSVNKELKPLGSTVQKKEREYKEALDTFNEKNREK 160
>At2g27740.1 68415.m03362 expressed protein contains Pfam profile
PF04949: Family of unknown function (DUF662)
Length = 174
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/58 (17%), Positives = 28/58 (48%)
Query: 69 VQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKRMKNENQ 126
++ +LE + +R++ + + R+D +N L + E ++ ++ KN+ +
Sbjct: 83 IREELEALTDPMRKEISAIRKRVDAINRELKPLGQSCQRKEREFKEALEAYNEKNKEK 140
>At1g27030.1 68414.m03295 expressed protein
Length = 310
Score = 26.6 bits (56), Expect = 6.0
Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 56 PGTKTYESMARMFVQSDLEHI-KQNLRQK--TNTLISRIDDLNNRKVCLNH 103
P + +++ + +F+++ E+I K LR+ T+ + L+N K+C +H
Sbjct: 7 PHSSSFKGESEIFLRNVFENILKTYLRKNPTAKTIWELVQSLDNEKICYDH 57
>At1g12150.1 68414.m01407 expressed protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827);
expression supported by MPSS
Length = 548
Score = 26.6 bits (56), Expect = 6.0
Identities = 18/95 (18%), Positives = 40/95 (42%)
Query: 16 LQVLMIETKKTIENIDHQLAVLGRMQMHTNLTQREIDVLPPGTKTYESMARMFVQSDLEH 75
++V I+T+ +++ +++ G + + + L + + M V +
Sbjct: 16 MEVGEIDTRAPFQSVKAAVSLFGEVAVSKQRSTPRRSRLSSESVCDKETQLMLVHKEFMK 75
Query: 76 IKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESES 110
IKQ L +T +DDL+ K + N+ E+
Sbjct: 76 IKQKLDNAESTRSRALDDLSKAKKTMEDLSNKLET 110
>At5g06560.1 68418.m00740 expressed protein contains Pfam profile
PF04576: Protein of unknown function, DUF593
Length = 518
Score = 26.2 bits (55), Expect = 8.0
Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 5/126 (3%)
Query: 10 KQAFVDLQVLMIETKKTIENIDHQLAVLGRMQMHTNLTQREIDVLPPGTKTYESMARMFV 69
+Q +DL+ L+ + ++TI+ + + M T+ E++ SM
Sbjct: 139 QQELLDLEDLIYKREQTIQALTFEAQAYKHRMMSFGFTEAEVETEKNMLSRNPSMIENDY 198
Query: 70 Q-----SDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKRMKNE 124
Q SD IK N+ + L + ID + K L + + ++ R + Q +R +
Sbjct: 199 QYDLPTSDYPPIKCNVNENPGPLEADIDVDDVEKYPLADSPHPLKTLERRISQMERNPSF 258
Query: 125 NQPAAE 130
QP +
Sbjct: 259 TQPTGD 264
>At3g62080.1 68416.m06975 SNF7 family protein contains Pfam domain,
PF03357: SNF7 family
Length = 423
Score = 26.2 bits (55), Expect = 8.0
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 40 MQMHTNLTQREIDVLPPGTKTYESMARMFVQSDLEHIKQNLRQK 83
+++ +L VLP + T +S+ MF + L KQ L ++
Sbjct: 362 LELEMDLESESSQVLPATSDTADSLTEMFSELKLGKTKQTLEEQ 405
>At3g25840.1 68416.m03219 protein kinase family protein contains
Pfam profile: PF00069 eukaryotic protein kinase domain
Length = 935
Score = 26.2 bits (55), Expect = 8.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 68 FVQSDLEHIKQNLRQKTNTLISRIDDLNNRK 98
++ SD+++ + +Q NT +DDL RK
Sbjct: 373 YISSDVDYGEMRHKQSRNTRYDAVDDLEMRK 403
>At2g37040.1 68415.m04544 phenylalanine ammonia-lyase 1 (PAL1)
nearly identical to SP|P35510
Length = 725
Score = 26.2 bits (55), Expect = 8.0
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 47 TQREIDVLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRI 91
T +D+L + T+ + + DL H+++NLRQ +S++
Sbjct: 510 TSEAVDILKLMSTTF--LVAICQAVDLRHLEENLRQTVKNTVSQV 552
>At2g06140.1 68415.m00675 hypothetical protein
Length = 633
Score = 26.2 bits (55), Expect = 8.0
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 69 VQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKRMKN 123
+ S + ++ +K + L R++++ V +N+TL + +I+D Q RM N
Sbjct: 73 INSRMTEMRAEFGEKFDNLTIRLENMGEALVEINNTLLNHQEDIQD--QNTRMVN 125
>At1g08400.1 68414.m00929 chromosome structural maintenance
protein-related contains weak similarity to
RAD50-interacting protein 1 [Homo sapiens]
gi|11967435|gb|AAG42101
Length = 804
Score = 26.2 bits (55), Expect = 8.0
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 13 FVDLQVLMIETKKTIENIDHQLAVLGRMQMH--TNLTQREI 51
FVDLQ L++ N++H + L +H T+LT+ +
Sbjct: 32 FVDLQDLLLRASTLTSNLNHDCSDLNDRLLHLRTDLTKHAV 72
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.314 0.128 0.344
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,872,881
Number of Sequences: 28952
Number of extensions: 102415
Number of successful extensions: 438
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 415
Number of HSP's gapped (non-prelim): 42
length of query: 138
length of database: 12,070,560
effective HSP length: 74
effective length of query: 64
effective length of database: 9,928,112
effective search space: 635399168
effective search space used: 635399168
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 55 (26.2 bits)
- SilkBase 1999-2023 -