Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000693-TA|BGIBMGA000693-PA|IPR004273|Dynein heavy chain
         (1030 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    26   1.1  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    26   1.1  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   6.1  

>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 207 GAVLYFAVAQLADI-DPMYQFSLKYFNQVFSAVI 239
           GA+ Y A+  L    D   Q  L+YF +VFS+++
Sbjct: 66  GALTYHAIFDLISFKDSDLQQKLRYFEEVFSSLL 99


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 207 GAVLYFAVAQLADI-DPMYQFSLKYFNQVFSAVI 239
           GA+ Y A+  L    D   Q  L+YF +VFS+++
Sbjct: 66  GALTYHAIFDLISFKDSDLQQKLRYFEEVFSSLL 99


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 116 VRLERPDLEILRTELIVRINADKATLLEIEDKILRLLYASSGNILDD-EELIETLNE 171
           V ++  + +I+R +   R N DK   L  E + L+       +++D  +++IE +++
Sbjct: 323 VLVDMCEQDIIRIDRNTRFNQDKIVALRQEQETLKSQVQRESDVVDSLKDVIEIVDK 379


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.137    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,320
Number of Sequences: 317
Number of extensions: 11071
Number of successful extensions: 29
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 3
length of query: 1030
length of database: 114,650
effective HSP length: 64
effective length of query: 966
effective length of database: 94,362
effective search space: 91153692
effective search space used: 91153692
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)