Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000693-TA|BGIBMGA000693-PA|IPR004273|Dynein heavy chain
         (1030 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    27   0.59 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   3.2  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    24   7.3  

>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 27.5 bits (58), Expect = 0.59
 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 644 FFSAPTLEDGYVYSQSGR----YYCPRADKLEAYKEYMDTLPVIEVPEVFGMHDNANIAF 699
           FF  P++    +++  G     Y+  +      + E+M  L   EV  VFG   N ++ +
Sbjct: 455 FFICPSIHFAQLFADRGMKVYYYFFTQRTSTNLWGEWMGVLHGDEVEYVFGHPLNKSLKY 514

Query: 700 ENKESNTLIQTIV 712
            +KE +  ++ I+
Sbjct: 515 SDKERDLSLRMIL 527


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 10  TKLNDPGYVRILENCIRLGW 29
           T + DP  +   E C++LGW
Sbjct: 202 TIIGDPANIEFTELCMKLGW 221


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 69  EYDTNFRLYMTTKLANPHYLPEI 91
           EY  NF+     K+  PH +P++
Sbjct: 258 EYRRNFKKMQEEKIFEPHRIPQL 280


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.137    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 303,545
Number of Sequences: 429
Number of extensions: 13562
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 3
length of query: 1030
length of database: 140,377
effective HSP length: 65
effective length of query: 965
effective length of database: 112,492
effective search space: 108554780
effective search space used: 108554780
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)