Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000693-TA|BGIBMGA000693-PA|IPR004273|Dynein heavy chain
(1030 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g18410.2 68418.m02167 expressed protein similar to p53 induci... 35 0.32
At5g18410.1 68418.m02166 expressed protein similar to p53 induci... 33 0.98
At1g58190.1 68414.m06605 leucine-rich repeat family protein cont... 32 1.7
At2g38010.2 68415.m04666 ceramidase family protein contains Pfam... 32 2.3
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 31 3.0
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos... 31 5.2
At5g63600.1 68418.m07985 flavonol synthase, putative similar to ... 30 9.2
At5g06940.1 68418.m00784 leucine-rich repeat family protein cont... 30 9.2
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 30 9.2
>At5g18410.2 68418.m02167 expressed protein similar to p53 inducible
protein [Homo sapiens] GI:5616320
Length = 1017
Score = 34.7 bits (76), Expect = 0.32
Identities = 28/122 (22%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 229 KYFNQVFSAVIEKSEKCDLLETRLEILHREITLNVYRNVSRGLFERHKLVFSFLLNMAVY 288
++ +Q AV+E + D+L+ E+L ++++++ + + + E LV SF +A
Sbjct: 781 RFESQDLCAVVELEKLIDILKHSHELLSQDLSIDPFSLMLNEMQENISLV-SFSSRLATQ 839
Query: 289 LNDGLVTMDEWNFVL-----RGPAGTKVVPPKKPNIESLSDQMWLAVHHLDETNENFRGL 343
+ + + NF+L R +KV P +KP++ S + L+ +++F L
Sbjct: 840 IWSEMQSDFLPNFILCNTTQRFVRSSKVPPTQKPSVPSAKPSFYCGTQDLNAAHQSFARL 899
Query: 344 VS 345
S
Sbjct: 900 HS 901
>At5g18410.1 68418.m02166 expressed protein similar to p53 inducible
protein [Homo sapiens] GI:5616320
Length = 1234
Score = 33.1 bits (72), Expect = 0.98
Identities = 27/114 (23%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 237 AVIEKSEKCDLLETRLEILHREITLNVYRNVSRGLFERHKLVFSFLLNMAVYLNDGLVTM 296
AV+E + D+L+ E+L ++++++ + + + E LV SF +A + + +
Sbjct: 755 AVVELEKLIDILKHSHELLSQDLSIDPFSLMLNEMQENISLV-SFSSRLATQIWSEMQSD 813
Query: 297 DEWNFVL-----RGPAGTKVVPPKKPNIESLSDQMWLAVHHLDETNENFRGLVS 345
NF+L R +KV P +KP++ S + L+ +++F L S
Sbjct: 814 FLPNFILCNTTQRFVRSSKVPPTQKPSVPSAKPSFYCGTQDLNAAHQSFARLHS 867
>At1g58190.1 68414.m06605 leucine-rich repeat family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.2
[Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
Length = 1784
Score = 32.3 bits (70), Expect = 1.7
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 329 AVHHLDETNENFRGLVSDCLRRIPITIGSFNVDIHVNNNDKTPPKINWDEKLSSFEKLMI 388
++ LD N +G + CL + N ++ N DK P +IN DE+ + + +L++
Sbjct: 1508 SIRILDLANNRLKGSIPTCLNNVSFG-RRLNYEV---NGDKLPFEINDDEEFAVYSRLLV 1563
Query: 389 L 389
L
Sbjct: 1564 L 1564
>At2g38010.2 68415.m04666 ceramidase family protein contains Pfam
domain, PF04734: Neutral/alkaline nonlysosomal
ceramidase
Length = 792
Score = 31.9 bits (69), Expect = 2.3
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 4/115 (3%)
Query: 413 FIESPTVQLNTLYADTNCAIPLVFVLSTGSDPFGAFQKFATEMGMRDRLHSISLGQGQGP 472
++ +P + + D + + LV + + P G+F FAT R +S+ G +G
Sbjct: 185 YLNNPAAERSKYKYDVDKEMTLVKFVDSQLGPTGSFNWFATHGTSMSRTNSLISGDNKGA 244
Query: 473 NCHLAASWMLSLE---VIVANLASEHGTPHSDFRLYLSSMPTAKFP-VSVLQNSV 523
W + + V N+ T SDF S P + P V++L +V
Sbjct: 245 AARFMEDWFENGQKNSVSSRNIPRRVSTIVSDFSRNRESYPFLELPNVAILYIAV 299
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 31.5 bits (68), Expect = 3.0
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 958 NPPLPVVWFYPVLELPKPDPRYQAPL 983
+PP P V++ PV++ P P P Y +P+
Sbjct: 646 SPPPPPVYYTPVIQSPPPPPVYYSPV 671
Score = 29.9 bits (64), Expect = 9.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 956 QMNPPLPVVWFYPVLELPKPDPRYQAPL 983
Q PP P V++ PV + P P P Y P+
Sbjct: 673 QSPPPPPPVYYPPVTQSPPPSPVYYPPV 700
>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
identical to CIP1 (GI:836950) [Arabidopsis thaliana]
Length = 1305
Score = 30.7 bits (66), Expect = 5.2
Identities = 53/264 (20%), Positives = 110/264 (41%), Gaps = 19/264 (7%)
Query: 104 LSGLEDQLLADVVRLERPDLEILRTELIVRINADKATLLEIEDKILRLLYASSGNILDDE 163
++GL +++ + LE L R+EL + K +++ DKI +S I+
Sbjct: 930 INGLSEKIKGRELELET--LGKQRSELDEELRTKKEENVQMHDKI----NVASSEIMALT 983
Query: 164 ELIETLNESKETSEI----INARLEETEATEINIS-AAREKYRTVATRGAVLYFAVAQLA 218
ELI L ++ ++ A LE + + +S + + + + A +
Sbjct: 984 ELINNLKNELDSLQVQKSETEAELEREKQEKSELSNQITDVQKALVEQEAAYNTLEEEHK 1043
Query: 219 DIDPMYQFSLKYFNQVFSAVIEKSEKCDLLETR-LEILHREITLNVYRNVSRGLFERHKL 277
I+ +++ + N+V ++ E LLE R E+ R+ T+ V+ L ++
Sbjct: 1044 QINELFKETEATLNKV---TVDYKEAQRLLEERGKEVTSRDSTIGVHEETMESLRNELEM 1100
Query: 278 VFSFLLNMAVYLNDGLVTMDEWNFVLRGPAGT---KVVPPKKPNIESLSDQMWLAVHHLD 334
+ + +++ V + N LR K +K + L +Q L +L
Sbjct: 1101 KGDEIETLMEKISNIEVKLRLSNQKLRVTEQVLTEKEEAFRKEEAKHLEEQALLE-KNLT 1159
Query: 335 ETNENFRGLVSDCLRRIPITIGSF 358
T+E +RG++ + ++ IT+ F
Sbjct: 1160 MTHETYRGMIKEIADKVNITVDGF 1183
>At5g63600.1 68418.m07985 flavonol synthase, putative similar to
SP|Q96330; contains Pfam profile PF03171: 2OG-Fe(II)
oxygenase superfamily
Length = 325
Score = 29.9 bits (64), Expect = 9.2
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 311 VVPPKKPNIESLSDQMWLAVHHLDETNENFRGLVSDCLRRIPITIGSFNVDIHVNNNDKT 370
++P + P +++ D+ WL + ++D ++ D L R +T G +H +DK
Sbjct: 214 LIPNEVPGLQAFKDEQWLDLDYIDSA---VVVIIGDQLMR--MTNGRLKNVLHRAKSDKD 268
Query: 371 PPKINW 376
+I+W
Sbjct: 269 KLRISW 274
>At5g06940.1 68418.m00784 leucine-rich repeat family protein
contains protein kinase domain, Pfam:PF00069; contains
leucine-rich repeats, Pfam:PF00560
Length = 872
Score = 29.9 bits (64), Expect = 9.2
Identities = 26/97 (26%), Positives = 52/97 (53%), Gaps = 14/97 (14%)
Query: 730 IVW-RICDQVRSTVSKK-IDKASVNPDLMVPDDMGQLHSLTTVLLHETDRFNALLALIHS 787
++W I DQ+ S K ID +S + + M+P+D+G L +L + L N L ++
Sbjct: 134 LIWGTIPDQISEFSSLKVIDFSSNHVEGMIPEDLGLLFNLQVLNLGS----NLLTGIVPP 189
Query: 788 SLGELQKAIKGIVVMSEAFEEVFNAFLNNRVPAMWHK 824
++G+L + + ++ +SE N++L + +P+ K
Sbjct: 190 AIGKLSELV--VLDLSE------NSYLVSEIPSFLGK 218
>At1g21650.1 68414.m02710 preprotein translocase secA family protein
contains Pfam profiles: PF01043 SecA protein, amino
terminal region, PF00400 WD domain, G-beta repeat,
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 29.9 bits (64), Expect = 9.2
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 147 KILRLLYASSGNILDDEELIETLNESKETSEI 178
K+L+ A SGN+LD+E ++++L E S I
Sbjct: 1508 KLLKEFMAISGNLLDEETMLQSLENLHEGSSI 1539
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.321 0.137 0.414
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,830,733
Number of Sequences: 28952
Number of extensions: 1097997
Number of successful extensions: 2539
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2527
Number of HSP's gapped (non-prelim): 19
length of query: 1030
length of database: 12,070,560
effective HSP length: 88
effective length of query: 942
effective length of database: 9,522,784
effective search space: 8970462528
effective search space used: 8970462528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 64 (29.9 bits)
- SilkBase 1999-2023 -