Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000693-TA|BGIBMGA000693-PA|IPR004273|Dynein heavy chain
(1030 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 58 8e-09
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 32 0.47
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 31 0.62
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 31 0.82
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po... 31 1.1
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo... 29 4.4
SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|c... 28 5.8
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 28 7.7
SPBC800.12c |||ubiquitin family protein, unknown|Schizosaccharom... 28 7.7
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 57.6 bits (133), Expect = 8e-09
Identities = 48/260 (18%), Positives = 112/260 (43%), Gaps = 11/260 (4%)
Query: 28 GWPMLIEDLGETLEATLSPVLLKQTFLQAGRLLIHLGDSDIEYDTNFRLYMTTKLANPHY 87
G ++I+D E + ++ P+L + F +G + I + +++ +
Sbjct: 3544 GSAIIIKD-AELWDVSIEPLLKPEFFTGSGEVQTTFAKDTITITLPLNIIFFSEVQSNEL 3602
Query: 88 LPEICIQVTLVNFTVTLSGLEDQLLADVVRLERPDLEILRTELIVRINADKATLLEIEDK 147
+ + +VNFT+++S LE Q+L V+ ++ P + + + + + ++++
Sbjct: 3603 ENKASKFMNVVNFTLSISLLETQMLKSVISVQEPGVFKQKDNCFTLKLSIERQIRSLQEQ 3662
Query: 148 ILRLLYASSGNILDDEELIETLNESKETSEIINARLEETEATEINISAAREKYRTVATRG 207
+L+ L +S+ NI+ +E++ L KE E I E+++ + +Y+
Sbjct: 3663 LLKTLCSSNENIVGTDEIVVLLKNLKEKHETIRLAYSESQSINRKVDELIRRYKLSIKSF 3722
Query: 208 AVLYFAVAQLADIDPMYQFSLKY----FNQVFSAVIEKSEKCDLLETRLEILHREITLNV 263
+ + Y FS + F+Q+ + V+E + D ++ L ++
Sbjct: 3723 LSVVVVFQHFISLKKSYSFSFNFIWSTFHQMLNVVLENRNQ-DFKSLIMDALR-----DL 3776
Query: 264 YRNVSRGLFERHKLVFSFLL 283
R +F +++F FLL
Sbjct: 3777 IRRCFLYIFPEDRVLFLFLL 3796
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 31.9 bits (69), Expect = 0.47
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
Query: 477 AASWMLSLEVIVANLASEHGTPHSDFRLYLSSMPTAKFPVSVLQNSVKVTNEPPKG---- 532
A+S + + I L S+H TPH+ +L SS A + + + ++ PPKG
Sbjct: 526 ASSSSIPVTDIKEILPSQHDTPHNSVKLTGSSTTPASVSLRQMIEPL-LSRTPPKGEFTN 584
Query: 533 -LKANVKRALIEMEEDFFENHVLGQDWRT 560
L ++ +E + F ENH DW T
Sbjct: 585 SLDDTPTQSNVEKVDRFLENH----DWET 609
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 31.5 bits (68), Expect = 0.62
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 16/160 (10%)
Query: 110 QLLADVVRLERPDLEILRTELIVRINADKATLLEIEDKILRLLYASSGNILDDEELIETL 169
QLL V + E+ L+ L + + K L++ K+ R L NI D +EL+ +
Sbjct: 268 QLLEQVYKREQKKLQALEDDYAI---FQKRCLVK---KLKRTL-----NIKDSDELL--I 314
Query: 170 NESKETSEIINARLEETEATEINISAAREKYRTVATRGAVLYFAVAQLADIDP--MYQFS 227
N + E+ A T A + S YR TR + + L D+ + QF
Sbjct: 315 NPKRRPIEVKPAAPVPTPAPPVKTSPHPASYRPQPTRNVEVR-PLLMLDDVQSAQITQFQ 373
Query: 228 LKYFNQVFSAVIEKSEKCDLLETRLEILHREITLNVYRNV 267
++ ++ DLLET ++H + YRN+
Sbjct: 374 IRLQQRLTKKEQLDRNWVDLLETPSTVIHTNYPDSFYRNI 413
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 31.1 bits (67), Expect = 0.82
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 61 IHLGDSDIEYDTNFRLYMTTKLANPHYLPEICIQVTLVNFTVTLSGLEDQLLADVVRLER 120
+ L + D+ + N Y + + + +L +C Q L+ TL G + V R+ R
Sbjct: 1481 LSLSEEDVFFQDNIN-YASNRYSFNFFLFSVCFQSLLI--PSTLQGFRNP----VFRIMR 1533
Query: 121 PDLEILRTELIVRINADKATLLEIEDKILRLL 152
E+L EL ++ D E+ D ++RL+
Sbjct: 1534 IMTEVLTEELCTKVLYDHNVFPEVVDLLVRLI 1565
>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 422
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 978 RYQAPLYKTSERAGTLSTTGHSTNFVLPVLLPT 1010
RY PLYKT R +LSTT H ++ + L T
Sbjct: 370 RYSLPLYKTHARRFSLSTTIHLFKKIVRITLST 402
>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
Sir2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 28.7 bits (61), Expect = 4.4
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
Query: 144 IEDKILRLLYA--SSGNILDDEELIETLNESKETS-EIINARLEETEATEINISAAREKY 200
+E+KI Y+ SSG+ L++ + SKET E +++ + TE NIS E+
Sbjct: 15 VEEKIPVASYSPSSSGSSSGASLLVDIMCGSKETEDEEVDSDEWDKPETE-NISDLDERS 73
Query: 201 RTVATRGAVLY--FAVAQLADIDPMYQFSLKYFNQVFSAVIEKSEKCDLLETRLEILHRE 258
V A Y F L + + + LK + +E+ E DLL E+L RE
Sbjct: 74 EMVRYLRASGYAKFLEKYLIEEELPVRSILKKLGINLPSALEEFEDIDLLPLLKEVLKRE 133
Query: 259 ITLNV 263
+ +
Sbjct: 134 VARRI 138
>SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 408
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 434 LVFVLSTGSDPFGAFQKFATEMGMRDRLHSISL 466
L+FV T SD +G F+K+ +E G+ I +
Sbjct: 297 LLFVNYTESDAYGVFEKYLSEQGITKEKQKIGV 329
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 144 IEDKILRLLYASSGNILDDEELIETLNESKETSEIIN 180
+ D L +L+ N+ DDE LIE ++E++ S+ ++
Sbjct: 1007 VADTWLEILFTKGSNLTDDE-LIELISENRSMSKALS 1042
>SPBC800.12c |||ubiquitin family protein,
unknown|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 27.9 bits (59), Expect = 7.7
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 91 ICIQVTLVNFTVTLSGLEDQLLADVVRLERPDLEILRTEL-----IVRINADKATLLEIE 145
I I LV F L+ E++ + V + RP ++ TE+ I+ + A+ L +
Sbjct: 37 ITIPAPLVEFQGNLALFEEKKVHVVAKTVRPPIQQASTEINVQSTILELKEVLASQLSTQ 96
Query: 146 DKILRLLYASSGNILDDEELIETLNESKETSEI 178
+RL+Y G L + L++ ++ SE+
Sbjct: 97 PSSIRLMY--KGKPLVNSRLLDDYVDADSVSEV 127
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.321 0.137 0.414
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,871,697
Number of Sequences: 5004
Number of extensions: 218206
Number of successful extensions: 538
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 532
Number of HSP's gapped (non-prelim): 13
length of query: 1030
length of database: 2,362,478
effective HSP length: 80
effective length of query: 950
effective length of database: 1,962,158
effective search space: 1864050100
effective search space used: 1864050100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)
- SilkBase 1999-2023 -