Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000693-TA|BGIBMGA000693-PA|IPR004273|Dynein heavy chain
(1030 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0644 + 25775166-25775377,25775599-25775635 35 0.39
02_05_0941 + 32953065-32953089,32954252-32954406,32954486-329545... 32 2.7
08_02_0277 - 15226062-15226169,15227075-15227203,15227416-152275... 31 4.8
05_07_0133 - 27908427-27908555,27908705-27908827,27908915-279090... 31 4.8
10_01_0102 - 1244294-1245478 30 8.3
02_03_0215 + 16505994-16506542,16506803-16507894 30 8.3
01_01_1126 + 8925685-8925745,8926178-8926343,8927135-8927585,892... 30 8.3
>11_06_0644 + 25775166-25775377,25775599-25775635
Length = 82
Score = 34.7 bits (76), Expect = 0.39
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 219 DIDPMYQFSLKYFNQVFSAVIEKSEKC--DLLETRLEILHREITLNVYRNVSRG 270
D DP Q N+ V+E E C D ET L LHRE V R +G
Sbjct: 23 DEDPTLQARTNILNKALDQVLELVESCRRDTQETALHTLHREAAAEVIRGFVKG 76
>02_05_0941 + 32953065-32953089,32954252-32954406,32954486-32954587,
32955089-32955140,32955237-32955349,32955542-32955610,
32955942-32956049,32956517-32956661,32957245-32957476,
32957567-32957853,32957951-32958087,32958520-32958667,
32959464-32959595,32960239-32960367,32960707-32960834,
32960911-32961075,32961462-32961587,32962088-32962161,
32962285-32962534,32962875-32963054,32963128-32963361,
32964771-32964840,32965065-32965177,32965403-32965511,
32965639-32965688,32965823-32965889,32966131-32966203,
32966393-32966448,32966729-32966831,32967377-32967458,
32967717-32967779,32967918-32967977,32968356-32968448,
32968561-32968623,32968699-32968797
Length = 1363
Score = 31.9 bits (69), Expect = 2.7
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 111 LLADVVRLERPDLEILRTELIVRINADKATLLEIEDKILRLLYASSGNILDDEELIETLN 170
L +V+RL+ + RT++ AD A LL D+ LR L A + + +L +L
Sbjct: 1235 LSEEVLRLQECLSKYQRTDVGSTPQADLAHLLASRDQELRALSAEMNQVHSELQLARSLI 1294
Query: 171 ESKETSEIINARLEETEATEIN 192
+ K+ SEI R+ + E N
Sbjct: 1295 DEKD-SEIQRIRVSNNQYIEEN 1315
>08_02_0277 -
15226062-15226169,15227075-15227203,15227416-15227583,
15227665-15228123,15228865-15229008
Length = 335
Score = 31.1 bits (67), Expect = 4.8
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 140 TLLEIEDKILRLLYASSGNILDDEELIETLNESKETSEIINARLEETEATEINISAAREK 199
+LL++ D + R +S + + I+T NES E +++N LE E TE + +K
Sbjct: 206 SLLDVADNLSR----ASSVVKESFSKIDTSNESAEAVKLLNTLLEGVEMTEKQLGEVFKK 261
Query: 200 Y 200
+
Sbjct: 262 F 262
>05_07_0133 -
27908427-27908555,27908705-27908827,27908915-27909022,
27909109-27909198,27909304-27909363,27909454-27909516,
27909604-27909678,27910337-27910402,27910607-27910786
Length = 297
Score = 31.1 bits (67), Expect = 4.8
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 54 LQAGRLLIHLGDSDIEYDT--NFRLYMTTKLANP--HYLPEICIQVTLVNFTVTLSGLED 109
++AG +I +G+ D YDT F KL LP+I + VT+ + TLS L+
Sbjct: 122 VEAGAKMIEIGNYDSFYDTGIEFSSEKILKLTKETREMLPDITLSVTVPH---TLSLLDQ 178
Query: 110 QLLADVVRLERPDLEILRTE 129
LA++ LE +I++TE
Sbjct: 179 VRLAEL--LEEEGADIIQTE 196
>10_01_0102 - 1244294-1245478
Length = 394
Score = 30.3 bits (65), Expect = 8.3
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Query: 757 VPDDMGQLHSLTTVLLHETDRFNALLALIHSSLGEL 792
+PD++G+L SLTT+ L FN L I +SLG L
Sbjct: 115 IPDEIGELRSLTTLSL----SFNNLTGHIPASLGNL 146
>02_03_0215 + 16505994-16506542,16506803-16507894
Length = 546
Score = 30.3 bits (65), Expect = 8.3
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 104 LSGLEDQLLADVVRLERPDLEILRTELIVRINADKATLLEIEDKILRLLYASSGNI-LDD 162
LS +E + + D LE PD+E T ++ L +I K+ +L Y +GNI DD
Sbjct: 161 LSKMEHEPIDD---LEIPDVEAKSTLVLDVSGTSIIKLPKIITKLKKLHYLRAGNIPKDD 217
Query: 163 EELIETLNESKETSEIINARLEETEATEINISAAR 197
L ES + S++ + +++ E ++ + +
Sbjct: 218 ATSSIELKESSDLSKMEHEPIDDLEIPDVEAKSVQ 252
>01_01_1126 +
8925685-8925745,8926178-8926343,8927135-8927585,
8927832-8927900,8928067-8928110,8928211-8928355
Length = 311
Score = 30.3 bits (65), Expect = 8.3
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 280 SFLLNMAVYLNDGLVTMDEWNFVLRGPAGTKVVPPKKPNIESLSDQMWLAVHHLDETNEN 339
S+ L+M + DG V W L G AG V + +++ +DQ HLD+ N
Sbjct: 40 SWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDEGFN 99
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.137 0.414
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,101,538
Number of Sequences: 37544
Number of extensions: 1301267
Number of successful extensions: 2676
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2675
Number of HSP's gapped (non-prelim): 7
length of query: 1030
length of database: 14,793,348
effective HSP length: 89
effective length of query: 941
effective length of database: 11,451,932
effective search space: 10776268012
effective search space used: 10776268012
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)
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