Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000692-TA|BGIBMGA000692-PA|IPR001367|Iron dependent
repressor, IPR003593|AAA ATPase, IPR013602|Dynein heavy chain,
N-terminal region 2, IPR011704|ATPase associated with various cellular
activities, AAA-5
(2768 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 436 e-122
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 35 0.19
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p... 33 0.57
SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ... 32 0.99
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo... 32 0.99
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 31 1.7
SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p... 31 2.3
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 31 2.3
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ... 31 2.3
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 31 3.0
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 31 3.0
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 30 4.0
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 30 5.3
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 29 7.0
SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyce... 29 9.3
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos... 29 9.3
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 29 9.3
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac... 29 9.3
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 436 bits (1073), Expect = e-122
Identities = 410/1732 (23%), Positives = 744/1732 (42%), Gaps = 104/1732 (6%)
Query: 1084 ISDLNDLAALTRKDLTLLFRKVLCALITIDVHARDTISHMVEKHVQKANDFEWLKMIRYY 1143
++D N+L+ +K +TL+F ++L H ++T+ + + N++ W + ++ +
Sbjct: 1785 LADENELSI--KKKVTLMFNELL--------HFKETVGLLCKNSF---NNYFWSREVKAF 1831
Query: 1144 WEEDIDN--CVARMSSAMYIYGHEYLGAGGVLVITPLTDRCYLCLMGALQLDLXXXXXXX 1201
+ ED D+ V +M S +IY EY +V T LT C+ L+ ++ +L
Sbjct: 1832 YREDHDDEAVVIKMFSLEFIYAFEYSELDDPIVYTDLTRNCFSVLLHSIASNLGGSPIGP 1891
Query: 1202 XXXXXXXXXXDLAKSLAIQCVVFNCSEGLDYKMMGRFFSGLATSGAWCCFDEFNRIDIEV 1261
++ L VFNC +YK + R SGLA G + CFDEFNR+D
Sbjct: 1892 AGTGKTETVKAVSAYLGKNVFVFNCDNAFNYKTIQRILSGLAQIGTYICFDEFNRLDSGT 1951
Query: 1262 LSVIAQQLITIRNAKVAKQTRFMFEGREIKLVRTCAAFITMNPGYAGRTELPDNLKALFR 1321
LS I+ + I++ V+ + L+ F+TMNPGY GR +LP NLK LFR
Sbjct: 1952 LSAISYDIQRIQSL-VSHSDGLC---QSPILLDAPTIFVTMNPGYLGRFKLPSNLKKLFR 2007
Query: 1322 PISMMVPDYALIAEVILYSEGFESSKGLAKKMVQMYKLSSEQLSKQDHYDFGMRAVKSVL 1381
PI M PD I E++ S GF+ S L++ + + S LS HYDFG+RA+K V+
Sbjct: 2008 PIWMGSPDNKKICEILFLSFGFKESSLLSQVLDSFFLCCSGSLSNCLHYDFGLRAMKVVI 2067
Query: 1382 VMA----GALKRANPDQHEEMTLLCALNDSNLPKFLAADAILFAGILSDLF--PGVSLPA 1435
A G LK+ N E L A+ + P + D LF F P V A
Sbjct: 2068 KAAKRIKGFLKKKNTICQELEILWYAIREVLYPSLIYQDIPLFFKAEESYFNFPAVKANA 2127
Query: 1436 R-DYGVMEDVIKIIMLERKLQIEICQIRKVIQLHETMIVRWGVMLVGPTGGGKTVVLHVL 1494
D E I+ + + K++QL++ G++L+G TG GK+ + +L
Sbjct: 2128 FIDPDNFEVNIEQTLSKNFFGNNQYLKLKIMQLYQMSEAYNGIILLGKTGSGKSQIFRIL 2187
Query: 1495 GDTYTRLYENGVEGSQYQPVRKYIMNPKSLTIGELYGEVNLQTLEWHDGILPLCLRTAVQ 1554
+ L G++ Y+++PK+LT L+G +N+ T EW DG+ LR
Sbjct: 2188 ---QSALLNIGID------CIVYVISPKALTKESLFGSMNMDTREWTDGVFTKLLRKTRD 2238
Query: 1555 CLNPDHQWLICDGPVDAVWIENMNTVLDDNKMLCLSNSERIKLTPYVHMVFEVADLAQAS 1614
+ D + W+E MN++LDDNK L LSN ERI L PYV + FE +A +
Sbjct: 2239 SCYYKRYMFVFDDELSPEWVEAMNSLLDDNKTLTLSNGERIALQPYVKIFFEADSVASLT 2298
Query: 1615 PATVSRCGMVYIDPNEMGYLPFVRSWLQ--EGVEKNLFNQENSDF--IYELFKMTQVGLD 1670
AT+SRCG++ I + L L G N +F ++ +V ++
Sbjct: 2299 RATISRCGLICISNIDDNILSSTDKMLSFTSGATNYPLGSSNDEFSTVFSKVLTDEVMMN 2358
Query: 1671 HVN--YNCGVGIKQV-DISK----VSAQCFLLGALLAEPGDRFADKAALK---IYIAHCF 1720
++ Y V ++ + + +K + L L + + K Y+
Sbjct: 2359 LISSCYKFSVDLQHIMNFTKQRFFTTFYSLLDQTKLFTRSSNITESLSFKELCNYLKKKI 2418
Query: 1721 IFCYVWCIGGNILEMNRQSFEEVIKR--QFEEYEEAEYYPQGFNFFDMYMDTRQRKLKVW 1778
+ WC G+ +R+ F + + + E ++ FD+ ++T+ W
Sbjct: 2419 CYILAWCCTGDTDAKSRERFTHWLMQNASVDLPEIKDFEHVSILDFDVSLETQS-----W 2473
Query: 1779 AEIIPEFIYDCNKPFF-ETLVPTIDTVRYGYLFEKLLGAGKPVMFTGNTGVGKTCIAVEI 1837
I + + + T++PT+DTVRY L + V+F G G GK+ + +
Sbjct: 2474 YPIAGKTLKSSALKYAGNTVIPTLDTVRYAEFLNFSLTKNRCVIFCGPPGSGKSMLMLGT 2533
Query: 1838 LNRMSLTGYYVPVILNFSAQTSSPRTQEVIELR--LDKRPRKAIGAPLG--KKIIIFIDD 1893
L S V + LNFS TSS +E + I P K +++F D+
Sbjct: 2534 LR--SRQDVEV-IALNFSISTSSKSVVSFLEQSTVYYRSTGMTIMCPKNHEKVLVLFCDE 2590
Query: 1894 VNMPKLDVYGAQPTIELLRQFLDFGGVYDRDKLYWKDILDVVLSCSCAPPGG-GRNPLTA 1952
+N+P+ A+ I LR L+ G + W I ++ + +C P GRN
Sbjct: 2591 INLPRSRNCLAEDVICFLRHMLEHQGFWHPLHKEWVTIKNIFVCGACNPSTDIGRNDFPE 2650
Query: 1953 RFVRHFAMLYIAAPNADAMKTIFKAILKGHMEDFVPEVSVLGESIVNAAVEVYLKICAEL 2012
RF+R ++++ P + ++ TI+ A+L+ + + + +IV A+V+ Y ++ E
Sbjct: 2651 RFLRRTVLIFVDYPESYSLVTIYNALLE--KSALINQYKTIILNIVKASVKFY-QVLREN 2707
Query: 2013 LPTPAKSHYVFNLRDLSKSMQGVLQAQAAYMRSPQ-GMLRLFYHECLRVFHDRLINIQDK 2071
+ + YV+ RDL++ + +Y + +++++YHE RV DRL++ ++
Sbjct: 2708 FKSSTQG-YVYTPRDLTRWLISFKNYAESYAETNNLSLIKVWYHEACRVLLDRLVSQKEC 2766
Query: 2072 SYFYHLMASVCEKNFQTPILSVPDEPIIEHPPLLLFGDFLNSSVPKENRTYQEIPDISKL 2131
S+ + V +F +SV I E ++F D L + + E D + L
Sbjct: 2767 SWGMTELQKVIVTDFGEFEVSV----IFEKQ--IIFTDILKNGL--------EFLDFASL 2812
Query: 2132 MIVLKEYLDEYNSTARAEMHLVLFQDXXXXXXXXXXXXXXXXGHCLMVGPGGSGRRSVAT 2191
L+ ++ S + LV + H L+ G G G+++V
Sbjct: 2813 RPKLESLYKKFYS-SHPNNTLVFVDETITHILRFHRILNNSGMHALLQGSVGLGQKAVVE 2871
Query: 2192 LAGHVNECKCLGMELKRNYDTPEFHDDLRMMYMRAG-VNCEDTVFLFTDTQITKEEFLED 2250
+N ++ + Y +F D+L+ + + AG NC+ ++ FL+
Sbjct: 2872 FVCWLNSFSLFELQKNQTYSIEDFEDNLKSILILAGTTNCK-ACLAINESIAGVPGFLDL 2930
Query: 2251 INNLLNSGEVPNLFEGDSYEQVQTGCRTEAAKSGVNPSDRDGVYYFFINRVRGKLHLCIC 2310
+NNLL + EV N F+ + + +++ + + V F+N V L +
Sbjct: 2931 LNNLLTNSEVSNFFDQNDWAEIKKNLNKLNEFQPLKFDSEESVTEIFMNNVFQNLCVVFY 2990
Query: 2311 MSPVGEAFRRRCRMFPSLVNCCTIDWFTKWPPEALLSVAHQCLQPLGNQEII-------- 2362
+ + + + P+L+N CTID++ W ++L +A++ LQ + +
Sbjct: 2991 VYTSADVDFQTNSLSPALLNRCTIDYYHSWDYHSMLQIANEVLQETISLNALDHDNPNLK 3050
Query: 2363 -TKISKLCVTMHQNVDMMTDRLYMEMRRYFYTTPSS---XXXXXXXXXXXXXXXXXXIIR 2418
K S + + Q V + E + T+ S + +
Sbjct: 3051 NIKGSSIYDAVAQAVVNTHTSIVWEFKHLGKTSYFSCLHFIRFLNTFCLIFGRDANKLSK 3110
Query: 2419 GRDRISCGLQKLYETYDVVGVMEQQVREMEPILARKAAESIALVERLKIEQKAADEVKQA 2478
+ RI G +K+ ET + ++ + + + +L K + ++ + I+ K A E K+
Sbjct: 3111 EKSRIENGFKKIKETSQGIDKFKEALSDQQNVLFSKTKTANDRLQCI-IQTKQAVEAKKV 3169
Query: 2479 V-MXXXXXXXXXXXXXXXXXXXXXXXLALAMPAMEXXXXXXXXXXXXDINELKAFQKPPA 2537
+ ++ A PA+ + EL++ +PP
Sbjct: 3170 YSLQAEASLQKKSFLLNEKKNSVMKEVSYAKPAVIEARKSVSDIKKAHLIELRSLSRPPM 3229
Query: 2538 LVRFVMEPVCILMGVK-PDWDSTKKLLADVNFIGKLADYDKDHIPDATL-KKIKV-YLTH 2594
+R ME VC L+G DW + ++LL +FI K+ +Y+ + L +KI+ Y ++
Sbjct: 3230 AIRITMEVVCKLLGFSATDWKNVQQLLKRDDFIPKILNYNLEKELSINLRRKIEQDYFSN 3289
Query: 2595 KDFNPDTVVKVSKVCRSMVLWVQAIDMYAKVFRVVEPKILKHKEAAAILKSVMAVLRAKQ 2654
F D+V + SK C ++LW+++I Y+KV +EP + K+ ++
Sbjct: 3290 PIFTFDSVNRASKACGPLLLWIKSICNYSKVLEKLEPLNSEVDRLKLEQKNAEECIQETI 3349
Query: 2655 KEVEAIEAQLAKMMDELKTVEDERLKLQADVDLAAARLSRAGKLTQALADEKTRWEESVK 2714
+ ++ +L ++ +E ++ E ++ +D ++ R+ ++ L+ E+ W +
Sbjct: 3350 AACKDLDEKLLQLQEEYASMISEIHSMELQMDEVKCKMQRSIEVITDLSIERNEWSGFLN 3409
Query: 2715 AATQQLHCTTGDIIVASGCIAYFGAFPSHYRRELELKWIAECSELEIPSSNT 2766
+++ G+ ++ + + Y G R L K S P S +
Sbjct: 3410 LYPKRMWNLVGESLMEASFVVYAGNLDPSMRIFLRNKCEPIISSFGFPISKS 3461
Score = 89.0 bits (211), Expect = 8e-18
Identities = 63/284 (22%), Positives = 124/284 (43%), Gaps = 8/284 (2%)
Query: 654 KELIDVIKEKLPVISYLRNPALKPRHWVKIEEILHTRFTPDVVMNLQMFEELQAFQ---H 710
K+ ++ +K+ ++ L++ LKP HW+ + EI T+ T + + ++ H
Sbjct: 1383 KQSLNQLKDCTLLLQKLKSCPLKPVHWISLFEI--TKSTEQLDFEKLLVSDILGIDLQAH 1440
Query: 711 SDELMEVAGQASSEAGLESLLKKVEEIWAALEFPVILHKDARDVYVLGGLDEIQASLDES 770
+ + A EA LE+ +V W F K Y++ G E+ +++++
Sbjct: 1441 ESFITTLLNSAVVEANLENQFNEVHSFWKNSYFSFKSFKGRN--YIVVGCQELIDAVEKN 1498
Query: 771 NIHISTILSSRNCGPIKSRVEEWAKNLELFAKTLEEWYACQQTWMYLEVIF-SAPDIQRQ 829
++ I +SR+ + + +++ K L W QQ W +L IF + IQ+
Sbjct: 1499 MDSLNLIKTSRHFKDGDMNITDLQSKMKIIVKFLNIWKEIQQIWTHLSAIFYESTYIQQL 1558
Query: 830 LPNETRLFSIVDKSWKDIMRKLAKVPLAMPAATQPKLYEEFVRNNEMLDQIMKCLEAYLE 889
LP F K++ ++ L + + P L E + + L+ K L Y E
Sbjct: 1559 LPELAASFFNSSKTYMHLVTLLKERSYLYKVSNIPSLLESAAKLSTTLEDSKKSLLKYFE 1618
Query: 890 TKRVAFPRFFFLSNDELLEILAQTRNPHAVQPHLRKCFDAIAKL 933
+R R +FL +D+L+E+++ +P + + K + I L
Sbjct: 1619 LQRHKISRLYFLGDDDLMELISNPCDPFVINKQIIKLYPGIRSL 1662
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex subunit
Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 34.7 bits (76), Expect = 0.19
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 2634 LKHKEAAAILKSVMAVLRAKQKEVEAIEAQLAKMMDELKTVEDERLKLQADVDLAAARLS 2693
++ KEA + + R ++K++ E AK M EL+ +E ER++LQ + +
Sbjct: 90 IRQKEAERLKREKERQQREQEKKLREQEKIAAKKMKELEKLEKERIRLQ---EQQRRKEE 146
Query: 2694 RAGKLTQALADEKTRWEESVKAATQQL 2720
R KL + ++ R E+ + QQL
Sbjct: 147 RDQKLREKEEAQRLRQEQILNKERQQL 173
>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 33.1 bits (72), Expect = 0.57
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 1090 LAALTRKDL-TLLFRKVLCALIT-IDVHARDTISHMVEKHVQKANDFEWLKMIRYYWEED 1147
L + R D T ++R VL L+ ID +DTIS M+ +HV KA L R + +ED
Sbjct: 253 LVQIIRSDTKTKVYRLVLAILVNLIDKAPKDTISTMLLEHVDKAVQ---LLQKRKWADED 309
Query: 1148 IDNCVARMSSAM 1159
I N + ++S +
Sbjct: 310 ITNYLDFITSTL 321
>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 384
Score = 32.3 bits (70), Expect = 0.99
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 15/110 (13%)
Query: 1069 PLRIDTGLLSYEKKCISDL---NDLAALTRKDL-------TLLFRKVLCALITIDVHARD 1118
P+ IDTG L EK +D+ NDL + KD TL +K C + D R
Sbjct: 196 PILIDTGNLKNEKTTDTDVKIVNDLCSFVPKDWVRDEFFDTLKEKKKSCKGFSFDDLLRR 255
Query: 1119 TISH-----MVEKHVQKANDFEWLKMIRYYWEEDIDNCVARMSSAMYIYG 1163
+ +V + +W+K R WE+++ + +S + I G
Sbjct: 256 DLKQYFPDGIVVNYASVGKGLDWIKKKRLGWEDELKSFAEVQNSDLVIVG 305
>SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 467
Score = 32.3 bits (70), Expect = 0.99
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
Query: 1465 IQLHETMIVRWGVMLVGPTGGGKTVVLHVLGDTYTRLYENGVEGSQYQPVRKYIMNPKSL 1524
I HE R V+L+ V+ LG + Y G G++Y K+I ++L
Sbjct: 22 IMRHEADRQRSSVVLIASENFTSRAVMDALGSVMSNKYSEGYPGARYYGGNKFIDQIETL 81
Query: 1525 TIGELYGEVNLQTLEWHDGILPLCL 1549
NL +W G+ CL
Sbjct: 82 CQERALAAFNLDPAKW--GVNVQCL 104
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 31.5 bits (68), Expect = 1.7
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 2627 RVVEPKILKHKEAAAILKSVMAVLRAKQKEVEAIEAQLAKMMDELKTVEDERLKLQADVD 2686
R +E L K + L+ V + +KEVEA++ QL EL++V+ E KL+ ++
Sbjct: 486 RKLEVLDLNVKSSREQLQYVSKSNQEHKKEVEALQLQLVNSSTELESVKSENEKLKNELV 545
Query: 2687 LAAARLSR----AGKLTQALADEKTRWEES 2712
L + + K+T D + ES
Sbjct: 546 LEIEKRKKYETNEAKITTVATDLSQYYRES 575
>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 227
Score = 31.1 bits (67), Expect = 2.3
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 2644 KSVMAVLRAKQKEVEAIEAQLAKMMDELKTVEDERLKLQADVDLAAARL 2692
KS + +L +KQK ++ I +++ K +D ++ +D K AD+ + A L
Sbjct: 78 KSRLEILNSKQKVIDDIFSRVEKKLDGIEQKKDAYTKFMADLIVQAMEL 126
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 31.1 bits (67), Expect = 2.3
Identities = 37/172 (21%), Positives = 80/172 (46%), Gaps = 20/172 (11%)
Query: 2539 VRFVMEPVCILMGVKPDWDSTKKLLADVNFIGKLADYDKDHIPDATLKKIKVYLTHKDFN 2598
V FV +C L+ KP+ + + D+NF + D + T K+ V + H ++
Sbjct: 784 VAFVQFQLCELIRQKPE---NSRTVEDLNFAMQQLDASIE-----TFTKL-VSVEHPPYS 834
Query: 2599 PDTVVKVSKVCRSMVLWVQAIDMYAKVFRVVEPKILKHKEAAAILKSVMAVLRAKQK--E 2656
P ++ + +K+ ++ ++ R ++ +I K AA L+ + R K+K
Sbjct: 835 PTSIEQRAKMAKNTTK--------RQLERAIQAQIEYEKSVAAKLEDAR-IQREKEKARR 885
Query: 2657 VEAIEAQLAKMMDELKTVEDERLKLQADVDLAAARLSRAGKLTQALADEKTR 2708
+ EA L + + + +++ER K+Q +V +A + +L+D++ +
Sbjct: 886 LAEEEALLKEKQERERQLQEERQKMQEEVLEWRKSQQKASEDDMSLSDDEEK 937
>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 31.1 bits (67), Expect = 2.3
Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 480 MTQFLGLSVT-LSTLRSDVDARIESRSKLAGMFASQIGKDIMNLMLDVNKLRDEVTQPWL 538
+ Q GLSVT + + +D E K + + L ++K++ E Q L
Sbjct: 192 LDQETGLSVTAIPIITETLDHAHEQEIKDQSLRFESSLNEANELHGKLSKIQQE--QEHL 249
Query: 539 YDEKSDLEKVMETLDDLLEKLMACSARDKQIREWQKIFKIPPARLEQLDEAINDVKLRQL 598
++++ EKV E ++ LE L+ ARD++ WQ F+ RL++L EA +L+Q
Sbjct: 250 FEQRLR-EKVSE-MESKLEALLI--ARDEK---WQSAFESEKLRLQKLHEA----RLQQE 298
Query: 599 LWKASKEWNDMFKSWYDNPFNTLDVDEIQN 628
L+K + + K+ TL+ +Q+
Sbjct: 299 LFKLASVFESKLKNELTEQAITLEKLHLQS 328
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 30.7 bits (66), Expect = 3.0
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 340 DVNIIKQERDLNEFRKLCEKFVKQMEAIEDVVSYQP 375
DVNI+K+ +D E +KL EK ++ + A V P
Sbjct: 102 DVNILKRTKDAEENKKLFEKIIEYIRATNKKVGVFP 137
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 30.7 bits (66), Expect = 3.0
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 1817 GKPVMFTGNTGVGKTCIAVEILNRMSLTGYYVPVILNFSAQTSSPRTQEVIE 1868
GK V+F G G GKT +A+ I + + P++ + + +T+ ++E
Sbjct: 64 GKGVLFAGGAGTGKTALALAIAQELGPKVPFCPMVGSEVYSSEIKKTEALME 115
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 30.3 bits (65), Expect = 4.0
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 183 LRIH-VNFTPSRELLEGSALDEVLEVLPRQTDTCKWALFQVDAYVRPNGAVELNPSQ-EI 240
LRI+ V + P R + ++D+ + V T TCK+ L DA+V LN Q +
Sbjct: 548 LRIYSVLYEPERNICISGSMDKSIRVWDLSTGTCKYVLEGHDAFV-----TLLNVFQNRL 602
Query: 241 ISSYLEKITSYWDEHVRK 258
IS + WD + K
Sbjct: 603 ISGSADSTIRIWDLNTGK 620
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 29.9 bits (64), Expect = 5.3
Identities = 18/95 (18%), Positives = 41/95 (43%)
Query: 208 LPRQTDTCKWALFQVDAYVRPNGAVELNPSQEIISSYLEKITSYWDEHVRKFRQFLTEET 267
L + D Q+D YV + + I+ +TS D ++ K + ++
Sbjct: 598 LQEKCDVLHTTFNQLDLYVGTTSVGKSSVLDNILKRIFNSLTSINDSNIEKLLESISYSL 657
Query: 268 LQMIVQPTIMGKQVEWSAGMSPNLYFLMNQDKKML 302
L++ + G + SA +S L ++++ +++L
Sbjct: 658 LKLFFKCANEGSRYNASAALSFKLSLMLHEKEEVL 692
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 29.5 bits (63), Expect = 7.0
Identities = 12/33 (36%), Positives = 25/33 (75%)
Query: 2649 VLRAKQKEVEAIEAQLAKMMDELKTVEDERLKL 2681
VLR ++ VEA+E +L ++++ELK +E++++
Sbjct: 1013 VLRGDKEIVEALETRLLEIVEELKNQVEEKIEV 1045
>SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 29.1 bits (62), Expect = 9.3
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 699 LQMFEELQAFQHSDELMEVAGQASSEAGLES--LLKKVEEIWAALEFPVILHKDARDVYV 756
LQ+ E+ F+ + ++++ S + + S LLK ++ AA E P+I+ D + +
Sbjct: 30 LQLNEQFNLFEGAKRVVDLCAAPGSWSQVLSRELLKNIDTSIAADEKPMIVAVDLQPMAP 89
Query: 757 LGGLDEIQASLDESNIHISTILS 779
+ G+ +Q + N +S ILS
Sbjct: 90 IDGVCTLQLDITHPNT-LSIILS 111
>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 701
Score = 29.1 bits (62), Expect = 9.3
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 305 ITFIPTSIKNAYECVWLFLNRMQAFMDSFKEAHEMDVNIIKQERDLNEFRKLCE 358
+ F+ TS YE V F+N + A M+S E +K R L +FR + E
Sbjct: 467 LNFVKTSFAQIYELVCSFVNNV-AVMESSSEKQLRTSRCLKIVRLLKQFRHMDE 519
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 29.1 bits (62), Expect = 9.3
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 2630 EPKILKHKEAAAILKSVMAVLRAKQKEVEAIEAQLAKMMDELKTVED 2676
E ++ HKEA A LKS + L +KEV ++E+QL + L+ ++
Sbjct: 334 EEQLESHKEAEASLKSQINFL---EKEVSSLESQLKLANERLRHYDE 377
>SPCC777.14 |prp4||serine/threonine protein kinase
Prp4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 477
Score = 29.1 bits (62), Expect = 9.3
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 833 ETRLFSIVDKSWKDIMRKLAKVPLAMPAATQPKLYEEFVRNNEMLDQIMKCLEAYLETKR 892
ETR K KDI +L +VP + EEF+ E++D + KCLE E KR
Sbjct: 412 ETRKPVKFSKPTKDIRSRLKEVPTSTD--------EEFIIRQELMDLLEKCLELNPE-KR 462
Query: 893 V 893
V
Sbjct: 463 V 463
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.323 0.138 0.413
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,087,980
Number of Sequences: 5004
Number of extensions: 515028
Number of successful extensions: 1485
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1445
Number of HSP's gapped (non-prelim): 36
length of query: 2768
length of database: 2,362,478
effective HSP length: 85
effective length of query: 2683
effective length of database: 1,937,138
effective search space: 5197341254
effective search space used: 5197341254
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 62 (29.1 bits)
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