GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000692-TA|BGIBMGA000692-PA|IPR001367|Iron dependent
repressor, IPR003593|AAA ATPase, IPR013602|Dynein heavy chain,
N-terminal region 2, IPR011704|ATPase associated with various cellular
activities, AAA-5
         (2768 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    29   1.3  
AF513635-1|AAM53607.1|  212|Anopheles gambiae glutathione S-tran...    29   1.3  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    29   1.7  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    27   5.2  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    27   9.1  

>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 2600 DTVVKVSKVCRSMVLWVQAIDMY---AKVFRVVEPKILKHKEAAAILK---SVMAVLRAK 2653
            D    + + C    +  Q   +Y    +  R+ E +I K +E   I K       VL+ K
Sbjct: 217  DRYASLKQECSEKQVHFQLFKLYHNEKEAKRLKEDQISKQQELNIIEKRKEEADEVLKEK 276

Query: 2654 QKEVEAIEAQLAKMMDELKTVEDERLK 2680
            +KEV  +  ++AK   E++ VE E  K
Sbjct: 277  KKEVGKMTREMAKKEQEIREVEAEMSK 303


>AF513635-1|AAM53607.1|  212|Anopheles gambiae glutathione
            S-transferase D4 protein.
          Length = 212

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 972  TASPEDLTTDIVAMLSPEGERVNLGKGLKARGNVEDWLGKV--EEAMFASVKRCMKFALK 1029
            TA+ +    DI  +++     + LG  L     + DWLG+V  E    A  +R ++ A +
Sbjct: 145  TAADQLTVADICLLVTVNALTLWLGYELAPYPRIRDWLGRVVAEIPGCAEFQREVEDATR 204

Query: 1030 EYMVNERV 1037
             Y+VN ++
Sbjct: 205  AYVVNRKI 212


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 16/78 (20%), Positives = 36/78 (46%)

Query: 2643 LKSVMAVLRAKQKEVEAIEAQLAKMMDELKTVEDERLKLQADVDLAAARLSRAGKLTQAL 2702
            +K +   +    K+++ + A ++K+  E+KT E    K +  ++     +  A    +  
Sbjct: 895  VKVLQTKINGLGKQIDKLSANISKLTVEIKTSERNVQKSKDKINSMEDEVEAAQSAIRKG 954

Query: 2703 ADEKTRWEESVKAATQQL 2720
             DE+T+ EE      ++L
Sbjct: 955  NDERTQLEEEANKLREEL 972



 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/56 (23%), Positives = 31/56 (55%)

Query: 2650 LRAKQKEVEAIEAQLAKMMDELKTVEDERLKLQADVDLAAARLSRAGKLTQALADE 2705
            + + + EVEA ++ + K  DE   +E+E  KL+ +++     + +A + + ++  E
Sbjct: 937  INSMEDEVEAAQSAIRKGNDERTQLEEEANKLREELEEMKLAIEKAHEGSSSIKKE 992


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 2647 MAVLRAKQKEVEAIEAQLAKMMDELKTVEDERLKL 2681
            M +LR  + ++E I   L  + D LKT+E+E+ +L
Sbjct: 176  MNLLRESEGKLEKISEYLRTIEDRLKTLEEEKEEL 210


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 2445 REMEPILARKAAESIALVERLKIEQKAADEV 2475
            +EME ILARK     +  +++ I Q++ DE+
Sbjct: 266  QEMEAILARKKELETSKAKQVAIGQRSTDEI 296


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.323    0.138    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,697,640
Number of Sequences: 2123
Number of extensions: 111107
Number of successful extensions: 292
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 278
Number of HSP's gapped (non-prelim): 15
length of query: 2768
length of database: 516,269
effective HSP length: 76
effective length of query: 2692
effective length of database: 354,921
effective search space: 955447332
effective search space used: 955447332
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)