Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000691-TA|BGIBMGA000691-PA|undefined
         (1257 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    27   0.61 
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    27   1.1  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    27   1.1  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    25   4.3  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   7.5  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 27.5 bits (58), Expect = 0.61
 Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 3/85 (3%)

Query: 3   LATELSTKKVSTDVCGFSQLKPMGQNRSYVEVYPIDESKPVMRCPIKSLVVKYNKDLLNL 62
           LAT L+  K +    G   +     +    ++  +   K  + C ++++++ YN D+  +
Sbjct: 272 LATGLTVNKSTAHAVGVGNIYDRVLSELVNKMKEMKMDKTELGC-LRAIIL-YNPDVRGI 329

Query: 63  KSIHEIHRVRRQIPYALRGRYRGQT 87
           KS+ E+  +R +I Y +   Y   T
Sbjct: 330 KSVQEVEMLREKI-YGVLEEYTRTT 353


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 4/85 (4%)

Query: 97  GNGKDDGKAEAQSAADSSRASVSGTSGMGQAQSQSMYDPTCDDCVGRSTGIDTSKQKPLG 156
           GN   +G A   +AA       S TSG G   + S+  P         + +       + 
Sbjct: 100 GNADQNGYASVVAAAAVKDVWQSATSGGGANLTNSLTGPVRPAACTPDSRVGYGSVGLV- 158

Query: 157 DSHGGIPSGLPSGAIGTPGNNLPFD 181
              GG P+  P  A G  GN+L ++
Sbjct: 159 ---GGDPASSPGAAAGRTGNSLSWN 180


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 510 YSPTSTGQNHMPGVIGSQNGLQGPGGQYAPTNTDGQIPGVQYNPGSTVGHNGLPIPGGLY 569
           +SP +TG N +P   GS N L    G      +   + G+  N    V  NGL   G   
Sbjct: 35  HSPCATGSNGLPAGAGS-NLLCASNGLVTTLASGSSLNGLTNN----VPSNGLSSSGPF- 88

Query: 570 NSGIGGG 576
            S IGGG
Sbjct: 89  -SSIGGG 94


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 2/33 (6%)

Query: 403 PHNLLAPNAVYGPGGNRPYQTDGQSNYQTKPNN 435
           PH    P+  Y P G   Y  DGQ      P +
Sbjct: 407 PH--AGPSGAYSPDGTMGYMMDGQQMMHRPPGD 437


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 450 GLGYHPGSQGNQGGSYPGST 469
           G G+HP  +  QG   P ST
Sbjct: 61  GKGFHPWKKSPQGAPSPSST 80


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.306    0.132    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 296,163
Number of Sequences: 317
Number of extensions: 14705
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 7
length of query: 1257
length of database: 114,650
effective HSP length: 65
effective length of query: 1192
effective length of database: 94,045
effective search space: 112101640
effective search space used: 112101640
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
S2: 48 (23.4 bits)