Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000691-TA|BGIBMGA000691-PA|undefined
         (1257 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    26   1.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   5.1  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 526 SQNGLQGPGGQYAPTNTDGQIPGVQYNPGSTVGHNGLPIPGGLYNSGIGGG 576
           +Q   Q   G  +P +T    P   Y+P S +G + L  PG L   G   G
Sbjct: 122 TQQQQQHNNGYASPMSTSSYDP---YSPNSKIGRDELSQPGSLNGYGSSDG 169


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 1/75 (1%)

Query: 1060 VDPNSALLIDGDDSAAEASVSQASNGTTAIASSKGGNDKGRAQTHVQGAYTGGGSFSAQA 1119
            +D  + L +D      E  ++     T+   +  G  ++   Q+ + G Y    S  A  
Sbjct: 810  IDKENILFLDLSTGKVEM-ITGVGKATSPNLTKWGNPNRPIVQSGIFGKYMVSPSNDALF 868

Query: 1120 EISGENKAANSEVTG 1134
             ++GE +  N E+ G
Sbjct: 869  VLNGETRTINCEIGG 883


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.306    0.132    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 366,187
Number of Sequences: 429
Number of extensions: 18038
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 2
length of query: 1257
length of database: 140,377
effective HSP length: 66
effective length of query: 1191
effective length of database: 112,063
effective search space: 133467033
effective search space used: 133467033
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
S2: 49 (23.8 bits)