Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000690-TA|BGIBMGA000690-PA|IPR001478|PDZ/DHR/GLGF
         (619 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   8.2  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    23   8.2  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 291 IYKSTNSKHSKMHRSNHSHSCAPC 314
           + KS  + H K H + + +SC  C
Sbjct: 269 VNKSMLNSHMKSHSNVYRYSCRDC 292


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 291 IYKSTNSKHSKMHRSNHSHSCAPC 314
           + KS  + H K H + + +SC  C
Sbjct: 27  VNKSMLNSHMKSHSNVYRYSCRDC 50


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.126    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,439
Number of Sequences: 317
Number of extensions: 6278
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 2
length of query: 619
length of database: 114,650
effective HSP length: 61
effective length of query: 558
effective length of database: 95,313
effective search space: 53184654
effective search space used: 53184654
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 46 (22.6 bits)