Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000690-TA|BGIBMGA000690-PA|IPR001478|PDZ/DHR/GLGF
(619 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual 35 0.038
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch... 34 0.051
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch... 34 0.051
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 33 0.089
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 30 0.83
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 29 1.9
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc... 28 4.4
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 28 4.4
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch... 27 5.8
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 27 5.8
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 27 7.7
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz... 27 7.7
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 27 7.7
>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 34.7 bits (76), Expect = 0.038
Identities = 13/58 (22%), Positives = 33/58 (56%)
Query: 61 KKNGSYGFTLQSYGIHYKKEQEIEVITYVDHVEMEGPAALAGMREGDVILSINGMDVE 118
K N SY FT +++G ++++ +I+ ++++++GP ++ + +L +VE
Sbjct: 130 KHNSSYKFTFETFGTRRTMKEQLSIISDFEYMQLQGPVSMHNPQHVFTVLENRRNNVE 187
>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 34.3 bits (75), Expect = 0.051
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 554 YQLESSGSESRLACECTDSIEYYRRITTSKNPGEPQSANYYTPHFVYPSHSYKKRDSNVS 613
Y L +G++S +AC +D+ + Y+ + N G P A FV PS S S +
Sbjct: 122 YNLLYNGTQSAVACPASDNDQVYQVYFGAGN-GNPNCAGIAIEAFVSPSSSSSSSSSAAT 180
Query: 614 SEITRL 619
S TR+
Sbjct: 181 STSTRV 186
>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 34.3 bits (75), Expect = 0.051
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 554 YQLESSGSESRLACECTDSIEYYRRITTSKNPGEPQSANYYTPHFVYPSHSYKKRDSNVS 613
Y L +G++S +AC +D+ + Y+ + N G P A FV PS S S +
Sbjct: 122 YNLLYNGTQSAVACPASDNDQVYQVYFGAGN-GNPNCAGIAIEAFVSPSSSSSSSSSAAT 180
Query: 614 SEITRL 619
S TR+
Sbjct: 181 STSTRV 186
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 33.5 bits (73), Expect = 0.089
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 250 CLIQPNLHTGSFVITVGSPRNSRDC-HHYIVKAPNDCYRASEIYKSTNSKHS 300
C +LH GS ++ S R+S D H Y+VK P++C + S+ HS
Sbjct: 199 CPSGTHLHEGSLLLEDSSARHSSDSVHEYLVKKPSNCDCECHAHFSSFPTHS 250
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 30.3 bits (65), Expect = 0.83
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 541 PTKSTESLIVVPKYQLESSGSESRLACECTDSIEYYRRITTSKNPGEPQSANYYTPHFVY 600
PT+S S I+ P Y L S S+ R D + N + Q T FV
Sbjct: 471 PTRSNSSSILQPSYNLNSHSSDRR---NTNDDDQSSLNSQQLSNQAKAQGEVSPTLSFVP 527
Query: 601 PSHSYKKRDSNVSS 614
SHS ++ + +V+S
Sbjct: 528 SSHSMEQGNGSVAS 541
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 29.1 bits (62), Expect = 1.9
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 127 DAINSCDSRMRMVVIFEDCVRKVELHLKYINLQRTLQSKMRELEQLSIRERQLFDANWKT 186
D ++S R++ + +F +K + + NLQ Q + + E+ + E +LFD + KT
Sbjct: 1901 DLLSSLVERIKQIEMFALKTQKDSNNHREENLQLHRQLGVLQKEKKDL-ELKLFDLDLKT 1959
Query: 187 HSLPSQKKKSSPNDVISDVEDS 208
+ + + K ISD+E S
Sbjct: 1960 YPISTSKDVRMLQKQISDLEAS 1981
>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 27.9 bits (59), Expect = 4.4
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 198 PNDVISDVEDSNESQNMGTTYRPTL 222
P+DV+ ++ +E + GTTY PT+
Sbjct: 257 PDDVVQELSSFDEHWHAGTTYDPTV 281
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 27.9 bits (59), Expect = 4.4
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 2 SSPKLNERCSSVLGNGKKLLANDSKEDSLDNSI-RESFKSERSGGAKNEE 50
S+PKL +R S KK L NDSK D + NS R S S S A E
Sbjct: 411 STPKLIKRMSL---RSKKSLRNDSKSDDVGNSTHRFSTASAASTSAVKTE 457
>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 577
Score = 27.5 bits (58), Expect = 5.8
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 592 NYYTPHFVYPSHSYKKRDSNVSSEI 616
NY P +YP+ S+ + D+NV++ +
Sbjct: 398 NYNAPMIIYPAISFLETDNNVTTNV 422
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 511 YQQHHEKHVHRQSANTQHYSVYTRSHSHYQPTKST 545
+ QH V R S + + +Y HSHY T ++
Sbjct: 249 FGQHVRHKVKRLSVRSPAHPIYQTQHSHYDETPTS 283
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 27.1 bits (57), Expect = 7.7
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 330 DLASPCCDPHCVPHTRKKVRRKKECSKDHKRREKYQVDK-STQKPDNVPPPRMKKVCSSG 388
DL D P + KKV+ +K K+ +REK + K +K D + +
Sbjct: 110 DLVDKSLDSSVSPVSSKKVKVRKTSGKESSKREKSKKKKEKKEKKDKLKKKSKRLKLDDS 169
Query: 389 HCS--RYRYLTTESTQTSQCSLQ 409
H + + ES ++S+ L+
Sbjct: 170 HTQKRKRKVRDKESKKSSKSGLK 192
>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 337 DPHCVPHTRKKVRRKKECSKDHKRREKY 364
D HCV + ++KV RKK + K R+KY
Sbjct: 102 DTHCVLNDKRKVERKK--TGQPKARKKY 127
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 27.1 bits (57), Expect = 7.7
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 30 LDNSIRES--FKSERSGGAKNEEDWRRRTIIVEKKNGSYGFTLQSYGIHYKKEQEIEVIT 87
+ NS RES F + G + EE+ ++ V +++ S F S +H K Q ++ +T
Sbjct: 285 MPNSGRESTIFLPRKLSGLREEEEQDEISVEVSQEDSSNAFPSLSDQLHLKSLQSMKRVT 344
Query: 88 YV 89
+
Sbjct: 345 SI 346
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.126 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,861,049
Number of Sequences: 5004
Number of extensions: 121466
Number of successful extensions: 361
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 354
Number of HSP's gapped (non-prelim): 14
length of query: 619
length of database: 2,362,478
effective HSP length: 77
effective length of query: 542
effective length of database: 1,977,170
effective search space: 1071626140
effective search space used: 1071626140
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)
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