Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000690-TA|BGIBMGA000690-PA|IPR001478|PDZ/DHR/GLGF
(619 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0161 + 27108920-27109279,27109479-27109598,27110301-271104... 37 0.055
10_06_0114 - 10911713-10911724,10913642-10913772,10913869-109142... 32 1.2
11_06_0309 + 22265906-22266929,22267451-22267629,22267966-222681... 32 1.6
10_08_0460 - 18098187-18098248,18098331-18098399,18098468-180994... 31 3.6
06_02_0135 + 12188739-12189086,12189191-12189272,12189397-121895... 31 3.6
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 31 3.6
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411... 30 4.8
02_01_0265 - 1754861-1755063,1755186-1755360,1755558-1755653,175... 30 4.8
08_02_0391 - 16612929-16613867 30 6.3
08_02_0056 + 11751585-11751672,11751741-11752060,11755363-117554... 30 6.3
08_02_1289 - 25923916-25924586,25925148-25926630 29 8.3
08_02_1080 - 24197514-24199415 29 8.3
>01_06_0161 +
27108920-27109279,27109479-27109598,27110301-27110438,
27110680-27110784,27110883-27111051,27111507-27111583,
27111796-27111840,27111984-27112022,27112374-27112457,
27112846-27112884,27112963-27113025,27113109-27113238,
27113319-27113374
Length = 474
Score = 36.7 bits (81), Expect = 0.055
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 94 MEGPAALAGMREGDVILSINGMDV 117
++GPA AG+R+GD +LS+NG+DV
Sbjct: 195 LDGPAHSAGVRQGDELLSVNGIDV 218
>10_06_0114 -
10911713-10911724,10913642-10913772,10913869-10914229,
10914339-10915081,10918916-10918964,10919063-10919334,
10919426-10919519,10919618-10920000,10920504-10920575,
10920656-10920778,10920875-10921048,10921115-10921579,
10921662-10921839
Length = 1018
Score = 32.3 bits (70), Expect = 1.2
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 156 INLQRTLQSKMRELEQLSIRERQLFDANWKTHSLPSQKKKSSPNDVISDVEDSNE--SQN 213
+ + ++QS + + RE+Q D N K ++KK S N ++++ + + +
Sbjct: 158 VTISSSMQSDGGNICRDEKREKQREDRNRKQREYRARKKAESNNAILANFDATTPIIGSS 217
Query: 214 MGTTYRPTLSSENVTAAK 231
GTTY L + +VT K
Sbjct: 218 FGTTYSTILQASSVTDNK 235
>11_06_0309 +
22265906-22266929,22267451-22267629,22267966-22268179,
22268273-22268510,22268617-22268767,22268934-22269158
Length = 676
Score = 31.9 bits (69), Expect = 1.6
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 222 LSSENVTAAKPPHPNVFMYQYLDPHYGTCLIQPNLHTGSFVITVG 266
LSSEN+T KP HP F + T L P+L+ + I G
Sbjct: 631 LSSENMTLPKPNHPAYFHIRVTKEEASTALESPSLNDVTMSILCG 675
>10_08_0460 -
18098187-18098248,18098331-18098399,18098468-18099434,
18100089-18100808,18100942-18101031,18101076-18101138,
18101223-18101366,18101471-18101527,18101606-18101680,
18101757-18101836,18101937-18102050,18102166-18102258,
18102470-18102553,18102812-18102859,18105207-18105337,
18105903-18106135
Length = 1009
Score = 30.7 bits (66), Expect = 3.6
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 133 DSRMRMVVIFEDCVRK-VELHLKYINLQRTLQSKMRELEQLSIRERQLFDANWKTHSLPS 191
D+ V++F RK ++ K +RT Q M ELE+L + + + + +TH L
Sbjct: 844 DATDNSVLMFNVLSRKGADIASKASKRKRTYQFMMEELEKLEMNVQLMIEQEAETH-LSQ 902
Query: 192 QKKKSSPNDVISDVED 207
+ + ND + E+
Sbjct: 903 DESNTVQNDTVQHAEE 918
>06_02_0135 +
12188739-12189086,12189191-12189272,12189397-12189527,
12189626-12189712,12189794-12189872,12190520-12190608,
12190765-12190806,12191030-12191149,12191819-12191968,
12192066-12192137,12192293-12192541
Length = 482
Score = 30.7 bits (66), Expect = 3.6
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 64 GSYGFTLQSYGIHYKKEQEIEVITYVDHVEMEGPAALAGMREGDVILSINGMDV 117
GS G ++Q G+ KE + +D +E GPA AG+ GD ++ I+G V
Sbjct: 195 GSDG-SVQGVGVFINKEPSSGRLLVMDCIE-GGPADRAGLHGGDELVEIDGKSV 246
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 30.7 bits (66), Expect = 3.6
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 369 STQKPDNVPPPRMKKVCSSGHCSRYRYLTTESTQTSQCSL 408
ST KPD +PP R+ V H S + T S+ S SL
Sbjct: 25 STDKPDTLPPGRLSPVSPLTHSSSSKLPTPSSSSGSSGSL 64
>06_03_0867 +
25534760-25539620,25540662-25540857,25540957-25541104,
25541673-25541751,25542151-25542238,25542330-25542600,
25542676-25542718,25542801-25542904,25543374-25543790
Length = 2068
Score = 30.3 bits (65), Expect = 4.8
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 17 GKKLLA-NDSKEDSLDNSIRESFKSERSGGAKNEEDWRRRTIIVEKKNGSYGFTLQSYGI 75
GKKL+ ND K L+NS R S S+ A + I+ S GF S G
Sbjct: 669 GKKLIGINDEKAFLLNNSARSSSTSDTCMTAVEGAQKKEGIILTGSSEKSIGFLGDSVGT 728
Query: 76 HYKKE 80
H E
Sbjct: 729 HRTTE 733
>02_01_0265 -
1754861-1755063,1755186-1755360,1755558-1755653,
1756110-1756256,1756343-1756511,1756661-1756812,
1756898-1756968,1757064-1757247,1757332-1757523,
1757664-1757771
Length = 498
Score = 30.3 bits (65), Expect = 4.8
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 8/135 (5%)
Query: 78 KKEQEIEVITYVDHVEMEGPAALAGMREGDVILSINGMDVERAEHAAIVDAINSCDSRMR 137
++++E+E I + + + A +E ++ S +D A A VDAIN+ +M
Sbjct: 118 RRQKELEAI--ISSADSKTLPLEAESKEQELKSSKRSLDELTAMLKANVDAINNFTRKME 175
Query: 138 MVVIFEDCVRKVELHLKYINLQRTLQSKMRELEQLSIRERQLFDANWKTHSLPSQKKKSS 197
+ D ++ +E NL++T+Q ++LEQL + R + A + + S
Sbjct: 176 ELKRQRDDLKALEA-----NLEQTVQDGAKDLEQL-MSSRSMHLAKQEECMKKIRDLGSL 229
Query: 198 PNDVISDVEDSNESQ 212
P D + N+ Q
Sbjct: 230 PADAFETYKRKNKKQ 244
>08_02_0391 - 16612929-16613867
Length = 312
Score = 29.9 bits (64), Expect = 6.3
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 23 NDSKEDSLDNSIRE-SFKSERSGGAKNEEDWRRRTIIVEKKNGSYGFTLQSYGIHYKKEQ 81
+DS DS D + S +S R+ A RR +IV + G +L G HY++ +
Sbjct: 19 SDSDSDSADAGDHDISSRSSRTNAAA------RRKVIVISLSRKKGRSLSQSGRHYRRRR 72
Query: 82 EIEVITYVDHVEMEG-PAALAGMREGDV 108
VE E P++ GMR G V
Sbjct: 73 SEIPAAAAKAVEAEDWPSSSDGMRRGAV 100
>08_02_0056 +
11751585-11751672,11751741-11752060,11755363-11755483,
11755950-11756137,11756224-11756355,11756535-11756577,
11757298-11757395
Length = 329
Score = 29.9 bits (64), Expect = 6.3
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 27 EDSLDNSIRESFKSERSGGAKNEEDWRRRTIIVEKKNGSY-GFTLQSYGIHYKKEQEIEV 85
E SL +R+ K E G K + R I+ +++ G G T + ++ +
Sbjct: 222 ERSLMERVRQELKHELKQGYKEKLIDIREEILRKRRAGKLPGDTTSTLKAWWQSHAKWPY 281
Query: 86 ITYVDHVEMEGPAALAGMREG 106
T V H E EG A G R+G
Sbjct: 282 PTKVSHYETEGLFAFTGGRQG 302
>08_02_1289 - 25923916-25924586,25925148-25926630
Length = 717
Score = 29.5 bits (63), Expect = 8.3
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 178 QLFDANWKTHSLPSQKKKSSPNDVISDVEDSNESQNMGTTYRPTLSSENVTAAKPP 233
Q+F+ N K P K +P+ + + S +GT+ PT ++E T P
Sbjct: 222 QMFEGNKKLCGAPVDAKCEAPSPAATTSPPAATSGKIGTSPSPTAAAETTTTGTVP 277
>08_02_1080 - 24197514-24199415
Length = 633
Score = 29.5 bits (63), Expect = 8.3
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 110 LSINGMDVERAEHAAIVDAINSCDSRMRMVVIFEDCVRKVE 150
LS NG DV+ + + +++ + RM + +D VR +E
Sbjct: 106 LSPNGKDVQHCDDSRVIEIVGCTSPSARMKQLVDDIVRGIE 146
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.126 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,570,281
Number of Sequences: 37544
Number of extensions: 717151
Number of successful extensions: 1672
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1667
Number of HSP's gapped (non-prelim): 13
length of query: 619
length of database: 14,793,348
effective HSP length: 86
effective length of query: 533
effective length of database: 11,564,564
effective search space: 6163912612
effective search space used: 6163912612
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 63 (29.5 bits)
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