GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000690-TA|BGIBMGA000690-PA|IPR001478|PDZ/DHR/GLGF
         (619 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70280.2 68414.m08086 NHL repeat-containing protein contains ...    33   0.43 
At1g70280.1 68414.m08085 NHL repeat-containing protein contains ...    33   0.43 
At5g46390.2 68418.m05710 peptidase S41 family protein similar to...    33   0.74 
At5g46390.1 68418.m05709 peptidase S41 family protein similar to...    33   0.74 
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc...    32   1.3  
At1g18710.1 68414.m02334 myb family transcription factor (MYB47)...    32   1.3  
At5g08010.1 68418.m00932 expressed protein condensin subunit SMC...    31   3.0  
At4g25430.1 68417.m03657 hypothetical protein                          30   5.2  
At5g04150.1 68418.m00403 basic helix-loop-helix (bHLH) family pr...    29   6.9  
At1g75040.1 68414.m08716 pathogenesis-related protein 5 (PR-5) i...    29   6.9  
At5g57740.1 68418.m07218 zinc finger (C3HC4-type RING finger) fa...    29   9.1  
At5g09350.1 68418.m01083 phosphatidylinositol 4-kinase, putative...    29   9.1  
At3g20190.1 68416.m02559 leucine-rich repeat transmembrane prote...    29   9.1  
At2g38410.1 68415.m04718 VHS domain-containing protein / GAT dom...    29   9.1  

>At1g70280.2 68414.m08086 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 509

 Score = 33.5 bits (73), Expect = 0.43
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 3/94 (3%)

Query: 510 EYQQHHEKHVHRQSANTQHYSVYTR-SHSHYQPTKSTESLIVVPKYQLESSGSESRLACE 568
           + Q+ H+KH H+Q    QH   Y+   H++Y+      + IV    Q +SS   ++   +
Sbjct: 417 QQQKQHQKHQHQQQQQQQHRRHYSSIPHTYYEQDSEKSNEIVFGAVQEQSSKRVAKPKPK 476

Query: 569 CTDSIEYYRRITTSKNPGEPQSANYYTPHFVYPS 602
             +S +     T         S +Y  P+  YP+
Sbjct: 477 PIESGDQMNNNTQQNLHYRSHSVSY--PYGYYPN 508


>At1g70280.1 68414.m08085 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 447

 Score = 33.5 bits (73), Expect = 0.43
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 3/94 (3%)

Query: 510 EYQQHHEKHVHRQSANTQHYSVYTR-SHSHYQPTKSTESLIVVPKYQLESSGSESRLACE 568
           + Q+ H+KH H+Q    QH   Y+   H++Y+      + IV    Q +SS   ++   +
Sbjct: 355 QQQKQHQKHQHQQQQQQQHRRHYSSIPHTYYEQDSEKSNEIVFGAVQEQSSKRVAKPKPK 414

Query: 569 CTDSIEYYRRITTSKNPGEPQSANYYTPHFVYPS 602
             +S +     T         S +Y  P+  YP+
Sbjct: 415 PIESGDQMNNNTQQNLHYRSHSVSY--PYGYYPN 446


>At5g46390.2 68418.m05710 peptidase S41 family protein similar to
           C-terminal peptidase of the D1 protein [Hordeum vulgare
           subsp vulgare] GI:1296805; contains Pfam profiles
           PF03572: Peptidase family S41B, PF00595: PDZ domain
           (Also known as DHR or GLGF)
          Length = 489

 Score = 32.7 bits (71), Expect = 0.74
 Identities = 12/24 (50%), Positives = 20/24 (83%)

Query: 94  MEGPAALAGMREGDVILSINGMDV 117
           ++  A +AG+++GD IL++NGMDV
Sbjct: 223 LDSAADIAGVKQGDEILAVNGMDV 246


>At5g46390.1 68418.m05709 peptidase S41 family protein similar to
           C-terminal peptidase of the D1 protein [Hordeum vulgare
           subsp vulgare] GI:1296805; contains Pfam profiles
           PF03572: Peptidase family S41B, PF00595: PDZ domain
           (Also known as DHR or GLGF)
          Length = 428

 Score = 32.7 bits (71), Expect = 0.74
 Identities = 12/24 (50%), Positives = 20/24 (83%)

Query: 94  MEGPAALAGMREGDVILSINGMDV 117
           ++  A +AG+++GD IL++NGMDV
Sbjct: 223 LDSAADIAGVKQGDEILAVNGMDV 246


>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein weak similarity to
           CARS-Cyp [Homo sapiens]  GI:1117968; contains Pfam
           profile PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 837

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 3/104 (2%)

Query: 280 KAPNDCYRASEIYKSTNSKHSKMHRSNHSHSCAPCMPVYNNPDANSLEAYDLASPCCDPH 339
           K  +D  +  +  KS   +  K  R + S S +      ++ +++S    DL+SP     
Sbjct: 179 KKKSDGKKNGKHKKSLRVRRKKRRRHSSSESESSSDSETDSSESDSESDSDLSSPSF-LS 237

Query: 340 CVPHTRKKVRRKKECSKDHKRREKYQVDKSTQKPDNVPPPRMKK 383
              H R+K +RK+   KD  RR K Q DK  +K  ++   R K+
Sbjct: 238 SSSHERQK-KRKRSSKKDKHRRSK-QRDKRHEKKRSMRDKRPKR 279


>At1g18710.1 68414.m02334 myb family transcription factor (MYB47)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 267

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 5/65 (7%)

Query: 30  LDNSIRESFKSERSGGAKNEEDWRRRTIIVEKKNGSYGFTLQSYGIHYKKEQEIEVITYV 89
           L NSI ES    +    K EE+  R +++ +K +GS G  +Q +G     E+E+  +  +
Sbjct: 187 LSNSIIESSDQAKEEEEKEEEEEERDSMMGQKIDGSEGEDIQIWG-----EEEVRRLMEI 241

Query: 90  DHVEM 94
           D ++M
Sbjct: 242 DAMDM 246


>At5g08010.1 68418.m00932 expressed protein condensin subunit SMC4,
           Drosophila melanogaster, EMBL:AF186472
          Length = 566

 Score = 30.7 bits (66), Expect = 3.0
 Identities = 30/143 (20%), Positives = 59/143 (41%), Gaps = 11/143 (7%)

Query: 136 MRMVVIFEDCVRKVELHLKYINLQRTLQSKMRELEQLSIR---ERQLFDANWKTHSLPSQ 192
           +R++ +   C  K     +   L+  LQ   R++EQL I    +++     W+TH     
Sbjct: 360 LRLLGVINSCYEK-----RIKELENALQESQRKVEQLVIESEEKKKPLSRIWETHEEMKY 414

Query: 193 KKKSSPNDVISDVEDSNESQNMGTTYRPTLSSENVTAAKPPHPNVF-MYQYLDPHYGTCL 251
           K+ S+P   ++ +E  +    +      TL  E + A    +  +  +  Y +     C+
Sbjct: 415 KRGSNPPVSVAHIEKKHNPAEIQPLVM-TLEGEALDAFNESYEELMDINDYSEEDDLQCV 473

Query: 252 IQPNLHTGSFVIT-VGSPRNSRD 273
           +Q N       +T   SP + +D
Sbjct: 474 MQENERQEELSLTSKSSPWSHKD 496


>At4g25430.1 68417.m03657 hypothetical protein
          Length = 455

 Score = 29.9 bits (64), Expect = 5.2
 Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 3/83 (3%)

Query: 338 PHCVPHTRKKVRRKKECSKDHKRREKYQVDKSTQKP-DNVPPPRMKKVCSSGHCSRYRYL 396
           PH  P+ R K R+KK+C K +     +   +  +K       P  K    +  CS  +  
Sbjct: 315 PHPTPNNRNKQRKKKQCKKIYVTSSAFSATERPRKQMKRAQEPERK--ADATICSGQKMY 372

Query: 397 TTESTQTSQCSLQSYATSNATVP 419
             E     + S   +  SN   P
Sbjct: 373 KYEKKLPQEPSSSKFYDSNTISP 395


>At5g04150.1 68418.m00403 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain; PMID: 12679534
          Length = 240

 Score = 29.5 bits (63), Expect = 6.9
 Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 7/91 (7%)

Query: 129 INSCDSRMRMVVIFEDCVRKVELHLKYINLQRTLQSKMRELEQLSIRERQLFD-ANWKTH 187
           +N+  S +R ++   D  RK+ + +    + + +  + +EL++LS R+ +L    + KTH
Sbjct: 81  LNALYSSLRALLPLSDQKRKLSIPMTVARVVKYIPEQKQELQRLSRRKEELLKRISRKTH 140

Query: 188 SLPSQKKKSSPNDVISDVEDSNESQNMGTTY 218
                 ++   N  + D  DS+ SQ +   +
Sbjct: 141 ------QEQLRNKAMMDSIDSSSSQRIAANW 165


>At1g75040.1 68414.m08716 pathogenesis-related protein 5 (PR-5)
           identical to SP|P28493 Pathogenesis-related protein 5
           precursor (PR-5) {Arabidopsis thaliana}; contains Pfam
           profile: PF00314 Thaumatin family
          Length = 239

 Score = 29.5 bits (63), Expect = 6.9
 Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 2/82 (2%)

Query: 330 DLASPCCDPHCVPHTRKKVRRKKECSKDHKRREKYQVDKSTQKPDNVPPPRMKKVCSSGH 389
           DL + C D   V      V  K  C + +   ++Y    +  KP+  PP    ++  +  
Sbjct: 154 DLNAACPDMLKVMDQNNVVACKSACERFNT--DQYCCRGANDKPETCPPTDYSRIFKNAC 211

Query: 390 CSRYRYLTTESTQTSQCSLQSY 411
              Y Y   + T T  C+  +Y
Sbjct: 212 PDAYSYAYDDETSTFTCTGANY 233


>At5g57740.1 68418.m07218 zinc finger (C3HC4-type RING finger)
           family protein / ankyrin repeat family protein contains
           Pfam profile: PF00097 zinc finger, C3HC4 type (RING
           finger) and Pfam profile: PF00023 ankyrin repeat
          Length = 508

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 30/116 (25%), Positives = 44/116 (37%), Gaps = 5/116 (4%)

Query: 311 CAPCMPVYNNPDANSLEAYDLASPCCDPHCVPHTRKKVRRKKECSKDHKRREKYQVDK-- 368
           C P M + N          D  +PC DP  V   RK       C+ +        +    
Sbjct: 293 CLPLMSIVNIAQECGWRENDCLTPCRDPCAVCLERKCTVAADGCAHEFCTNCALYLSTTS 352

Query: 369 -STQKPDNVPPPRMK-KVCSSGHCSRYRY-LTTESTQTSQCSLQSYATSNATVPCD 421
            ++ K  NV P  +   +C +G  S  +   TT +T+TS  S  S + S  T   D
Sbjct: 353 ITSSKTSNVTPGSVPCPLCRNGIVSFTKLPHTTATTRTSTSSRTSISLSFCTCSSD 408


>At5g09350.1 68418.m01083 phosphatidylinositol 4-kinase, putative
           strong similarity to gi:4467359
          Length = 1116

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query: 18  KKLLANDSKEDSLDNSIRESFKSERSGGAKNEEDWRRRTIIVEKKNG 64
           KKLL +   ED   N+  E F  +    +KNE+D     +  E+K+G
Sbjct: 336 KKLLRDSKNEDEEPNANTEGFFKKLFHESKNEDDKVSNAVDDEEKDG 382


>At3g20190.1 68416.m02559 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor kinase GB:AAA33715
           [Petunia integrifolia]
          Length = 679

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 340 CVPHTRKKVRRKKECSKDHKRREKYQVDKSTQK 372
           C+ HTR++       S    R EKY  D+ST K
Sbjct: 300 CILHTRRRKSLSAYPSAGQDRTEKYNYDQSTDK 332


>At2g38410.1 68415.m04718 VHS domain-containing protein / GAT
           domain-containing protein weak similarity to hepatocyte
           growth factor-regulated tyrosine kinase substrate HRS
           isoform 2 [Homo sapiens] GI:9022389; contains Pfam
           profiles PF00790: VHS domain, PF03127: GAT domain
          Length = 671

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 31/164 (18%), Positives = 71/164 (43%), Gaps = 7/164 (4%)

Query: 66  YGFTLQSYGIHYKKEQEIE--VITYVDHVEMEGPAALAGMRE--GDVILSINGMDVERAE 121
           YG     YG+     + ++  + T V+ + +    ++  + +  GD++ +++  D E  +
Sbjct: 205 YGIPQVGYGMPSGSSRRLDEAMATEVEGLSLSSIESMRDVMDLLGDMLQAVDPSDREAVK 264

Query: 122 HAAIVDAINSCDSRMRMVVIFEDCVRKVELHLKYINLQRTLQSKMRELEQLSIRERQLFD 181
              IVD +  C S  + ++         EL  + ++L  +LQ  + + + ++        
Sbjct: 265 DEVIVDLVERCRSNQKKLMQMLTSTGDDELLGRGLDLNDSLQILLAKHDAIASGSPLPVQ 324

Query: 182 ANWKTHSLPSQK-KKSSPNDVISDVEDSNESQNMGTTYRPTLSS 224
           A+    S+ + K   SSP    S+ +DS+      +    T+S+
Sbjct: 325 ASGSPLSVQASKPADSSPKS--SEAKDSSSIAGSSSPIPATVST 366


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.313    0.126    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,559,853
Number of Sequences: 28952
Number of extensions: 610691
Number of successful extensions: 1650
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1638
Number of HSP's gapped (non-prelim): 18
length of query: 619
length of database: 12,070,560
effective HSP length: 85
effective length of query: 534
effective length of database: 9,609,640
effective search space: 5131547760
effective search space used: 5131547760
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 62 (29.1 bits)