Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000688-TA|BGIBMGA000688-PA|IPR004481|K+-dependent
Na+/Ca+ exchanger related-protein, IPR004837|Sodium/calcium exchanger
membrane region
         (427 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    25   1.0  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   4.1  

>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 300 ILWATIPDCRHRHSIYPLTFIMCITWIGSVSYLVAWIITV 339
           +L AT  D RH+   YPLT+    +    V   +AW+ ++
Sbjct: 130 VLMATAID-RHQAICYPLTYCSWTSRRSKVMVYLAWVASL 168


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 145 NCVGTFVTEGDLGVGAVVGSAVFNVLAVPACCALFAG 181
           + V  F+T GDL +    G  VF  L + A  ++ AG
Sbjct: 372 HAVACFLTRGDLWLSWEEGMKVFEELLLDADWSVNAG 408


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.327    0.141    0.449 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,322
Number of Sequences: 317
Number of extensions: 4414
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 2
length of query: 427
length of database: 114,650
effective HSP length: 59
effective length of query: 368
effective length of database: 95,947
effective search space: 35308496
effective search space used: 35308496
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 44 (21.8 bits)