Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000688-TA|BGIBMGA000688-PA|IPR004481|K+-dependent
Na+/Ca+ exchanger related-protein, IPR004837|Sodium/calcium exchanger
membrane region
         (427 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    25   1.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   2.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   4.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   4.9  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 352 GLTILAAGTSLPEAVSSVLVTKQGHGTMGISNSI 385
           G T+   GT+L EAV+++ + +    ++GI   I
Sbjct: 392 GATVNMDGTALYEAVAAIFIAQMNGISLGIGEVI 425


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 145 NCVGTFVTEGDLGVGAVVGSAVFNVLAVPACCALFAG 181
           + V  F+T GDL +    G  VF+ L + A  ++ AG
Sbjct: 376 HAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAG 412


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 138 SSPELFINCVGTFVTEGDLGVGAVVGSAVFN 168
           S PE++I+ V        LG+GA+V    +N
Sbjct: 275 SDPEVWIDAVTQIFFSYALGLGALVALGSYN 305


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 138 SSPELFINCVGTFVTEGDLGVGAVVGSAVFN 168
           S PE++I+ V        LG+GA+V    +N
Sbjct: 328 SDPEVWIDAVTQIFFSYALGLGALVALGSYN 358


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.327    0.141    0.449 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,547
Number of Sequences: 429
Number of extensions: 4651
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 4
length of query: 427
length of database: 140,377
effective HSP length: 60
effective length of query: 367
effective length of database: 114,637
effective search space: 42071779
effective search space used: 42071779
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 45 (22.2 bits)