GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000688-TA|BGIBMGA000688-PA|IPR004481|K+-dependent
Na+/Ca+ exchanger related-protein, IPR004837|Sodium/calcium exchanger
membrane region
         (427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    60   8e-10
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa...    44   5e-05
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    31   0.31 
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    28   2.2  

>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 59.7 bits (138), Expect = 8e-10
 Identities = 26/87 (29%), Positives = 49/87 (56%)

Query: 319 FIMCITWIGSVSYLVAWIITVVGDTLNVPDSITGLTILAAGTSLPEAVSSVLVTKQGHGT 378
           F++ I WI +++  V  I+  +G   N+ +SI GLT+ AAG SL + ++ +++ + G   
Sbjct: 589 FVLGIIWISTIANEVVGILRALGVIFNLNESILGLTVFAAGNSLSDLIADIMIARSGFPE 648

Query: 379 MGISNSIGSNTFDILLCLGLPWLVKSL 405
           M +    G  T +IL+ +G+     S+
Sbjct: 649 MAMGGVFGGPTLNILIGIGISSFYSSI 675



 Score = 52.8 bits (121), Expect = 9e-08
 Identities = 32/137 (23%), Positives = 60/137 (43%), Gaps = 3/137 (2%)

Query: 96  LYCFLLLGSVCEDYFVPAIEIICERLNIASDIAGATFMAAASSSPELFINCVGTFVTEGD 155
           ++ F+ +G    D+F   +  I   L +   + G TF+A  + SP++        V  G 
Sbjct: 120 IFLFITIGISASDFFSTNLVTISWLLQLPDSVVGVTFLALGNGSPDILSTFAAVRVNSGG 179

Query: 156 LGVGAVVGSAVFNVLAVPACCALFAGAVIELDWWSVTRDCMMYXXXXXXLILTLL-DDKI 214
           + +G ++GSA F V  V     L      ++      RD          +I+ +L D  +
Sbjct: 180 MAIGELLGSAFFIVAIVAGSVCLI--KPFKIPRRHFLRDVAFLTGTILLVIMFVLHDGSL 237

Query: 215 YWHEALLLVLMYTFYIL 231
              ++L+++L Y  Y+L
Sbjct: 238 SIWQSLVMILYYLLYVL 254



 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 4/106 (3%)

Query: 317 LTFIMCITWIGSVSYLVAWIITVVGDTLNVPDSITGLTILAAGTSLPEAVSSVLVTKQGH 376
           L F+     I +  +    ++T+    L +PDS+ G+T LA G   P+ +S+    +   
Sbjct: 119 LIFLFITIGISASDFFSTNLVTISW-LLQLPDSVVGVTFLALGNGSPDILSTFAAVRVNS 177

Query: 377 GTMGISNSIGSNTFDILLCLGLPWLVKSLFYPSTPENHWVTDLYFI 422
           G M I   +GS  F + +  G   L+K       P  H++ D+ F+
Sbjct: 178 GGMAIGELLGSAFFIVAIVAGSVCLIKPF---KIPRRHFLRDVAFL 220


>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
           exchanger|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 412

 Score = 43.6 bits (98), Expect = 5e-05
 Identities = 30/137 (21%), Positives = 59/137 (43%), Gaps = 17/137 (12%)

Query: 104 SVCEDYFVPAIEIICERLNIASDIAGATFMAAASSSPELFINCVGTFVTEGDLGVGAVVG 163
           S+C DY V +I+ + E +NI+    G   +    ++ E     V ++  + DL +G  +G
Sbjct: 277 SLCADYLVGSIDQLVEEVNISKTFVGLVILPVVGNAAEHVTAIVVSYRGQMDLALGVAIG 336

Query: 164 SAVFNVLAVPACCALFAGAVIELDWWSVTRDCMMYXXXXXXLIL---------TLLDDKI 214
           S++          ALF    + +  W +++   +Y      +IL          + D   
Sbjct: 337 SSI--------QIALFLAPFLVIVGWIISQPLTLYFESLETVILFVSVFLVNYLIQDGAT 388

Query: 215 YWHEALLLVLMYTFYIL 231
           +W E + L+ +Y   +L
Sbjct: 389 HWLEGVQLLALYAIVVL 405


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 31.1 bits (67), Expect = 0.31
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%)

Query: 237 LDASQRMTPRSVQNGDLERGIEMT-----RRHDSTGSDISTSSVWSFPG-DKISF 285
           LD+S + TPRS + GD+   ++M+     R  D     +ST S   F G D ++F
Sbjct: 88  LDSSSQRTPRSTRRGDIHSSVQMSTPSRRREVDPQRPGVSTPSSLLFSGSDALTF 142


>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 157 GVGAVVGSAVFNVLAVPACCALFAGAVIELDW 188
           G+G +VGS V  V+A P   A     VI+  W
Sbjct: 390 GIGGIVGSIVLGVVAHPDVAASDGATVIDGGW 421


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.327    0.141    0.449 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,909,172
Number of Sequences: 5004
Number of extensions: 77996
Number of successful extensions: 226
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 218
Number of HSP's gapped (non-prelim): 8
length of query: 427
length of database: 2,362,478
effective HSP length: 75
effective length of query: 352
effective length of database: 1,987,178
effective search space: 699486656
effective search space used: 699486656
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 55 (26.2 bits)