Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000687-TA|BGIBMGA000687-PA|IPR001734|Na+/solute
symporter
         (320 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5050| Best HMM Match : SSF (HMM E-Value=0.001)                      64   1e-10
SB_5049| Best HMM Match : SSF (HMM E-Value=0.26)                       64   1e-10
SB_35002| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.004
SB_31080| Best HMM Match : RNA_pol_Rpb7_N (HMM E-Value=4.5)            38   0.008
SB_21462| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.7  
SB_6825| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_26920| Best HMM Match : Rap_GAP (HMM E-Value=6.9e-29)               28   8.8  
SB_5453| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.8  
SB_13561| Best HMM Match : BPL_C (HMM E-Value=6.9)                     28   8.8  

>SB_5050| Best HMM Match : SSF (HMM E-Value=0.001)
          Length = 364

 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 28/71 (39%), Positives = 45/71 (63%)

Query: 92  IFIMAAGIFIIVSLCCYTGLVIYATFDNCDPLTIGAIRKSDQLLPYFVMTITGSIPALPG 151
           +++   G+ +IV+LC   GLVI+A +  CD    G I  +DQ+LPYFV+   G +  LPG
Sbjct: 254 VWLNIPGLILIVTLCWLDGLVIFAVYSGCDLREDGKISSNDQVLPYFVINKLGHLQGLPG 313

Query: 152 IFMSGVFSAAL 162
           +F + +++ AL
Sbjct: 314 MFTACLYAGAL 324



 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 21/54 (38%), Positives = 37/54 (68%)

Query: 35 FDWLDYVVFGAMLLLSSLIGVYFAFFASKKQNTTSEYLMGGKTMGMFPISMSLI 88
          F  +DYVVF  M+L+S+ IG+++      KQ +T EYL+  + M ++P+++SL+
Sbjct: 5  FSIVDYVVFALMMLVSAAIGIWYGCGPGGKQTSTKEYLLADRKMKVWPVAISLL 58


>SB_5049| Best HMM Match : SSF (HMM E-Value=0.26)
          Length = 442

 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 32/94 (34%), Positives = 56/94 (59%), Gaps = 1/94 (1%)

Query: 133 QLLPYFVMTITGSIPALPGIFMSGVFSAALSSMSTGLNSMCGVIFEDLIRPAYNKPITEK 192
           Q+LPYFV+   G +  LPG+F + +++ ALS+ S+ LN+M  V+ ED+++      + + 
Sbjct: 219 QILPYFVINKLGYLKGLPGMFTACLYAGALSTGSSALNAMALVVLEDIVKKRV-PDLNDG 277

Query: 193 NASFIMKIIVVAIGATCVALVFLVEHMGALIQAG 226
           + + I K + VA GA      F+V+ +G L+  G
Sbjct: 278 DQAKICKFVAVAFGAIVTGGAFVVKFVGTLVLQG 311


>SB_35002| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 907

 Score = 39.5 bits (88), Expect = 0.004
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 40  YVVFGAMLLLSSLIGVYFAFFASKKQNTTSEYLMGGKTMGMFPISMSLIARTIFIMA 96
           ++     L  S+ IGVYFA   S+ Q+  SEYLM  ++M   P+++S++A  +  +A
Sbjct: 248 FIAGSPTLAASAGIGVYFARVGSRNQSN-SEYLMASRSMSAIPVAISVLASFVSSIA 303



 Score = 31.9 bits (69), Expect = 0.72
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 4/47 (8%)

Query: 251 NATGALAGGISSTLLVGWISLGTQAAIMRGEIIILPKAVSVDGCEGN 297
           N+ G  AG I+  +++ WIS+G Q  +   +  ILP  +SV GC  N
Sbjct: 377 NSKGVWAGMIAGFVVITWISVGAQ--VQPPDYPILP--ISVAGCASN 419


>SB_31080| Best HMM Match : RNA_pol_Rpb7_N (HMM E-Value=4.5)
          Length = 91

 Score = 38.3 bits (85), Expect = 0.008
 Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 3/41 (7%)

Query: 164 SMSTGLNSMCGVIFEDLIRP---AYNKPITEKNASFIMKII 201
           ++S+GLNS+  V+ ED+IRP    YN+ +TE  A+   KI+
Sbjct: 2   TVSSGLNSLAAVVLEDIIRPFNKIYNRTMTESTATKYTKIL 42


>SB_21462| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 3/95 (3%)

Query: 48  LLSSLIGVYFAFFASKKQNTTSEYLMGGKTMGMFPISMSLIARTIFIMAAGIFIIVSLC- 106
           L+S L+G++      +   T+  +LMGG    +F     +   ++FI+   +  IVS   
Sbjct: 96  LMSPLMGIWLPKVGPRFMITSGLFLMGGAET-LFGFVADMPNGSVFIVFCILLRIVSALG 154

Query: 107 -CYTGLVIYATFDNCDPLTIGAIRKSDQLLPYFVM 140
                + I+A      P +IGA+      LP+ VM
Sbjct: 155 GSMADVAIFAIVAGEFPNSIGAVTAGGFRLPFIVM 189


>SB_6825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 5/99 (5%)

Query: 53  IGVYFAFFASKKQNTTSEYLMGGKTMGMFPISMSLIARTIF-IMAAGIFIIVSLCCYTGL 111
           IG+ + + AS   N     L GG+ +      + +I R  F  ++ G+ ++    CY  +
Sbjct: 134 IGIAYIWIASALANVDKIILAGGQELEQAHYDIQIIIRVGFCTVSLGVVVL----CYLTI 189

Query: 112 VIYATFDNCDPLTIGAIRKSDQLLPYFVMTITGSIPALP 150
            I  TF    P    A   +   +  F++T+   I  LP
Sbjct: 190 WIKITFKKRFPNQRQANNNTKLTVTLFIVTLISIICFLP 228


>SB_26920| Best HMM Match : Rap_GAP (HMM E-Value=6.9e-29)
          Length = 1890

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 16/49 (32%), Positives = 24/49 (48%)

Query: 14   NDPAASSVRAHHSNCIMTIVYFDWLDYVVFGAMLLLSSLIGVYFAFFAS 62
            +DP  +S + H  N  +TIVY D  D V +G +     L  +Y   F +
Sbjct: 1352 SDPGCNSKKMHIGNDFVTIVYNDSGDEVKYGTIKTPRVLRDLYVINFVT 1400


>SB_5453| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2578

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/17 (64%), Positives = 13/17 (76%)

Query: 128  IRKSDQLLPYFVMTITG 144
            I  SDQ+LPYFVM + G
Sbjct: 1750 IENSDQILPYFVMHLNG 1766


>SB_13561| Best HMM Match : BPL_C (HMM E-Value=6.9)
          Length = 73

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 280 GEIIILPKAVSVDGCEGNFTVPKEPSMSTETEFDRLLA 317
           G +I+L  A  VDGC+ + +V  + +   +  FD L A
Sbjct: 31  GRVIVLSVAEMVDGCQADVSVFAKSTNEVQMLFDELSA 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.325    0.138    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,796,771
Number of Sequences: 59808
Number of extensions: 295380
Number of successful extensions: 868
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 857
Number of HSP's gapped (non-prelim): 13
length of query: 320
length of database: 16,821,457
effective HSP length: 82
effective length of query: 238
effective length of database: 11,917,201
effective search space: 2836293838
effective search space used: 2836293838
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 60 (28.3 bits)