GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000687-TA|BGIBMGA000687-PA|IPR001734|Na+/solute
symporter
         (320 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    29   1.2  
SPBC342.04 |||adhesion regulating molecule protein homolog|Schiz...    27   2.7  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    26   8.2  
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    26   8.2  

>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 532

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 36 DWLDYVVFGAMLLLSSLIGVYFAFFASKKQNTTSE---YLMGGKTMGMFPISMSL 87
          +W  ++  G +L+L     ++F FF+S K   T+E   +++   + GM P S+S+
Sbjct: 23 NWKTWIKHGILLILVLSTVIFFYFFSSHKSKGTNEKPKFVIMMVSDGMGPGSLSM 77


>SPBC342.04 |||adhesion regulating molecule protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 291

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 132 DQLLPYFVMTITGSIPALPGIFMSGVFSAALSSMSTGLNSMCGV 175
           D+L+PY       ++  +  I  S  ++ AL S S  LNS  GV
Sbjct: 209 DRLMPYMPPDTPNNLEGVLAIVSSPQYAQALRSFSQALNSPGGV 252


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 11  KNSNDPAASSVRAHHSNCIMTIVYFDWLDYVVFGAMLLLSS 51
           KN++   ASSV ++HS+   +I   +     V+G+  L+SS
Sbjct: 216 KNNSKKTASSVNSNHSSIPSSITKSNISSLDVYGSEKLISS 256


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 50  SSLIGVYFAFFASKKQNTTSEYLMGGKTMGMFPIS 84
           ++ I  YF +   KK+   SE L+G  TM  FP S
Sbjct: 570 AATIHQYFFYLQHKKELNASELLVGLLTMVDFPSS 604


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.138    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,254,390
Number of Sequences: 5004
Number of extensions: 45298
Number of successful extensions: 155
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 151
Number of HSP's gapped (non-prelim): 4
length of query: 320
length of database: 2,362,478
effective HSP length: 73
effective length of query: 247
effective length of database: 1,997,186
effective search space: 493304942
effective search space used: 493304942
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 54 (25.8 bits)