GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000687-TA|BGIBMGA000687-PA|IPR001734|Na+/solute
symporter
         (320 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1263 + 35316083-35316185,35317167-35317220,35317665-353179...    30   2.8  
02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657           29   5.0  
06_03_0575 + 22431744-22432212,22432473-22433077                       29   6.6  

>02_05_1263 +
           35316083-35316185,35317167-35317220,35317665-35317903,
           35317989-35318089,35318390-35318583,35318885-35319003,
           35319624-35319749,35320081-35320142,35320265-35320348,
           35320580-35320664
          Length = 388

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 2/19 (10%)

Query: 106 CCY--TGLVIYATFDNCDP 122
           CC+  T LV Y +FDNCDP
Sbjct: 370 CCHNSTTLVCYPSFDNCDP 388


>02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657
          Length = 1136

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 156 GVFSAALSSMSTGLNSMCGVIFEDLIRPAYNKPITEKNASFIMKIIVVAIGATCVALVFL 215
           GVF  A ++   G + +CG I E  + P +N+  T+K +  ++ II +      + L+F+
Sbjct: 731 GVFLNATATFLAGNDDLCGGIPEMKLPPCFNQ-TTKKASRKLIIIISICRIMPLITLIFM 789

Query: 216 V 216
           +
Sbjct: 790 L 790


>06_03_0575 + 22431744-22432212,22432473-22433077
          Length = 357

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/25 (52%), Positives = 17/25 (68%)

Query: 88  IARTIFIMAAGIFIIVSLCCYTGLV 112
           IA + F +AA + II+  CC TGLV
Sbjct: 3   IASSSFSLAAILLIIIMYCCPTGLV 27


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.325    0.138    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,909,992
Number of Sequences: 37544
Number of extensions: 283772
Number of successful extensions: 785
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 784
Number of HSP's gapped (non-prelim): 3
length of query: 320
length of database: 14,793,348
effective HSP length: 82
effective length of query: 238
effective length of database: 11,714,740
effective search space: 2788108120
effective search space used: 2788108120
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 60 (28.3 bits)