GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000687-TA|BGIBMGA000687-PA|IPR001734|Na+/solute
symporter
         (320 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73898-8|CAJ90496.1|  431|Caenorhabditis elegans Hypothetical pr...   101   9e-22
Z73898-7|CAA98070.1|  577|Caenorhabditis elegans Hypothetical pr...   101   9e-22
AF026214-2|AAB71314.2|  446|Caenorhabditis elegans Hypothetical ...    61   1e-09
AF016451-6|AAB66000.2|  379|Caenorhabditis elegans Serpentine re...    29   4.4  

>Z73898-8|CAJ90496.1|  431|Caenorhabditis elegans Hypothetical
           protein ZK822.5b protein.
          Length = 431

 Score =  101 bits (241), Expect = 9e-22
 Identities = 62/221 (28%), Positives = 107/221 (48%), Gaps = 4/221 (1%)

Query: 88  IARTIFIMAAGIF-IIVSLCCYTGLVIYATFDNCDPLTIGAIRKSDQLLPYFVMTITGSI 146
           +A++I I     F ++ S+  + G +  A F NC+PL  G +++SD +   F   I    
Sbjct: 136 VAQSIIIYTLAPFTVLCSIVAFVGFIALAYFYNCNPLETGEVKESDHITISFARDILQPT 195

Query: 147 PALPGIFMSGVFSAALSSMSTGLNSMCGVIFEDLIRPAYNKPITEKNASFIMKIIVVAIG 206
           P L G+++S + SA LS++S+G+NSM   I+ED ++ + +  IT+  A+ + KIIV+  G
Sbjct: 196 PGLFGLYVSCIMSATLSTLSSGMNSMAAAIYEDFLKNSLDGKITDTGATRLNKIIVLICG 255

Query: 207 ATCVALVFLVEHMGALIQAGKSLAGITAXXXXXXXXXXXXXPWINATGALAGGISSTLLV 266
            +   L FL E +G  ++   S+ G  +             P   +   L     S L  
Sbjct: 256 LSSTGLAFLAEVLGGSLRICISVMGAMSGPMVAIFVLALFFPKSGSKSCLISFFLSNLFC 315

Query: 267 GWISLGTQAAIMRGEIIILPKAVSVDGCEG--NFTVPKEPS 305
             I +         + + LP   +++GC G  NFT+   P+
Sbjct: 316 LIICIANYIQDPYHD-LFLPTNTTLEGCNGNSNFTIRMMPT 355


>Z73898-7|CAA98070.1|  577|Caenorhabditis elegans Hypothetical
           protein ZK822.5a protein.
          Length = 577

 Score =  101 bits (241), Expect = 9e-22
 Identities = 62/221 (28%), Positives = 107/221 (48%), Gaps = 4/221 (1%)

Query: 88  IARTIFIMAAGIF-IIVSLCCYTGLVIYATFDNCDPLTIGAIRKSDQLLPYFVMTITGSI 146
           +A++I I     F ++ S+  + G +  A F NC+PL  G +++SD +   F   I    
Sbjct: 282 VAQSIIIYTLAPFTVLCSIVAFVGFIALAYFYNCNPLETGEVKESDHITISFARDILQPT 341

Query: 147 PALPGIFMSGVFSAALSSMSTGLNSMCGVIFEDLIRPAYNKPITEKNASFIMKIIVVAIG 206
           P L G+++S + SA LS++S+G+NSM   I+ED ++ + +  IT+  A+ + KIIV+  G
Sbjct: 342 PGLFGLYVSCIMSATLSTLSSGMNSMAAAIYEDFLKNSLDGKITDTGATRLNKIIVLICG 401

Query: 207 ATCVALVFLVEHMGALIQAGKSLAGITAXXXXXXXXXXXXXPWINATGALAGGISSTLLV 266
            +   L FL E +G  ++   S+ G  +             P   +   L     S L  
Sbjct: 402 LSSTGLAFLAEVLGGSLRICISVMGAMSGPMVAIFVLALFFPKSGSKSCLISFFLSNLFC 461

Query: 267 GWISLGTQAAIMRGEIIILPKAVSVDGCEG--NFTVPKEPS 305
             I +         + + LP   +++GC G  NFT+   P+
Sbjct: 462 LIICIANYIQDPYHD-LFLPTNTTLEGCNGNSNFTIRMMPT 501



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 5/61 (8%)

Query: 33 VYFDWLDYVVFGAMLLLSSLIGVYFAF---FASKKQNTTS--EYLMGGKTMGMFPISMSL 87
          V   WLDY +FG  + LS   GVY A       ++ + T+  EYLMGG+ +   P+++SL
Sbjct: 5  VSLHWLDYAIFGLSIGLSLSTGVYHAIKSRIILRRGDRTAKEEYLMGGRQLPPLPVALSL 64

Query: 88 I 88
          +
Sbjct: 65 L 65


>AF026214-2|AAB71314.2|  446|Caenorhabditis elegans Hypothetical
           protein F52H2.4 protein.
          Length = 446

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 40/169 (23%), Positives = 76/169 (44%), Gaps = 9/169 (5%)

Query: 110 GLVIYATFDNCDPLTIGAIRKSDQLLPYFVMTITGSIPALPGIFMSGVFSAALSSMSTGL 169
           G +IYA + +C P     I  +++LLP FVM +T   P   G+F + V+SA +S++S   
Sbjct: 209 GFLIYAHYKDCHP----QIGNANELLPRFVMDVTSKYPGSVGLFAAAVYSAGISTLSASF 264

Query: 170 NSMCGVIFEDLIRPAYNK----PITEKNASFIMKIIVVAIGATCVALVFLVEHMGALI-Q 224
            ++  ++  D+ +    +    P+        M+I+ + +    + + FL   + ++I Q
Sbjct: 265 TAVSSIVINDVWKVYRERRKMAPLRNDQVQNAMRILPIVLSFISIFVAFLCSMLQSIILQ 324

Query: 225 AGKSLAGITAXXXXXXXXXXXXXPWINATGALAGGISSTLLVGWISLGT 273
               + G                P +    AL G I S ++   IS+G+
Sbjct: 325 VSFIVFGAGGGPVLGSFVVGLFVPRVKEKAALVGLIGSIIVCFSISIGS 373


>AF016451-6|AAB66000.2|  379|Caenorhabditis elegans Serpentine
           receptor, class w protein140 protein.
          Length = 379

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 81  FPISMSLIARTIFIMAAGIFIIVSLCCYT-GLVIYATFDN 119
           FP+ +S     +F    GIF+I+  C +   +++YA F +
Sbjct: 289 FPLGVSTFLTYLFYDIQGIFVIIRFCEFLFSVILYANFSS 328


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.325    0.138    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,741,673
Number of Sequences: 27539
Number of extensions: 241005
Number of successful extensions: 879
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 872
Number of HSP's gapped (non-prelim): 5
length of query: 320
length of database: 12,573,161
effective HSP length: 81
effective length of query: 239
effective length of database: 10,342,502
effective search space: 2471857978
effective search space used: 2471857978
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 60 (28.3 bits)