GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000687-TA|BGIBMGA000687-PA|IPR001734|Na+/solute
symporter
         (320 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   4.7  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   8.2  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   8.2  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/40 (27%), Positives = 17/40 (42%)

Query: 250 INATGALAGGISSTLLVGWISLGTQAAIMRGEIIILPKAV 289
           I   G L GG S   L+  + +       +  +IILP  +
Sbjct: 297 IRQEGLLCGGSSGAALIAALKIAKDIPEEKRMVIILPDGI 336


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 289 VSVDGCEGNFTVPKEPSMSTETEFDR 314
           +SV  CEG      +PS+++ T F +
Sbjct: 64  ISVTKCEGFCNSQVQPSVASTTGFSK 89


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 289 VSVDGCEGNFTVPKEPSMSTETEFDR 314
           +SV  CEG      +PS+++ T F +
Sbjct: 64  ISVTKCEGFCNSQVQPSVASTTGFSK 89


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.138    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,778
Number of Sequences: 429
Number of extensions: 2713
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 3
length of query: 320
length of database: 140,377
effective HSP length: 58
effective length of query: 262
effective length of database: 115,495
effective search space: 30259690
effective search space used: 30259690
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 44 (21.8 bits)