GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000687-TA|BGIBMGA000687-PA|IPR001734|Na+/solute
symporter
         (320 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47570.1 68416.m05179 leucine-rich repeat transmembrane prote...    35   0.063
At2g36750.1 68415.m04508 UDP-glucoronosyl/UDP-glucosyl transfera...    31   0.78 
At2g48050.1 68415.m06014 expressed protein ; expression supporte...    31   1.4  
At3g14840.2 68416.m01875 leucine-rich repeat family protein / pr...    30   2.4  
At3g14460.1 68416.m01832 disease resistance protein (NBS-LRR cla...    29   3.1  
At5g39390.1 68418.m04772 leucine-rich repeat family protein / pr...    28   7.2  
At2g37700.1 68415.m04623 CER1 protein, putative similar to CER1 ...    28   9.6  

>At3g47570.1 68416.m05179 leucine-rich repeat transmembrane protein
           kinase, putative protein kinase Xa21 - Oryza sativa,
           PIR:A57676
          Length = 1010

 Score = 35.1 bits (77), Expect = 0.063
 Identities = 17/65 (26%), Positives = 38/65 (58%), Gaps = 3/65 (4%)

Query: 154 MSGVFSAALSSMSTGLNSMCGVIFEDLIRPAYNK--PITEKNASFIMKIIV-VAIGATCV 210
           + G+F  A +    G N +CG I    ++P  ++   + +K++S + K+++ V++G T +
Sbjct: 594 VKGIFENATTVSIVGNNDLCGGIMGFQLKPCLSQAPSVVKKHSSRLKKVVIGVSVGITLL 653

Query: 211 ALVFL 215
            L+F+
Sbjct: 654 LLLFM 658


>At2g36750.1 68415.m04508 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 491

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 4/108 (3%)

Query: 101 IIVSLCCYTGLVIYATFDNCDPLTIGAIRKSDQLLPYFVMTITGSIPALPGIFMSGVFSA 160
           I   +CC+  L  +    N + L      K    +P F   +  +   LP + ++G +  
Sbjct: 145 IFHGMCCFNLLCTHIMHQNHEFLETIESDKEYFPIPNFPDRVEFTKSQLPMVLVAGDWKD 204

Query: 161 ALSSMSTGLNSMCGVI---FEDLIRPAYNKPITEKNASFIMKIIVVAI 205
            L  M+ G N+  GVI   FE+L  PAY +   +  A  I  I  V++
Sbjct: 205 FLDGMTEGDNTSYGVIVNTFEEL-EPAYVRDYKKVKAGKIWSIGPVSL 251


>At2g48050.1 68415.m06014 expressed protein ; expression supported by
            MPSS
          Length = 1500

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 6/77 (7%)

Query: 42   VFGAMLLLSSLIGVYFAFFASKKQNTTSEYLMGGKTMGMFPISMSLIARTIFIMAAGIFI 101
            +FGA L++  L+ +++      K    SE++   +    FP    +I   IF +   +  
Sbjct: 1309 IFGADLIVFFLVAIFYQSVIKNK----SEFIDVYQLEDQFPFDFVIILMVIFFLIV-VDR 1363

Query: 102  IVSLCCY-TGLVIYATF 117
            ++ LC + TG V+Y  F
Sbjct: 1364 VIYLCSFATGKVVYYLF 1380


>At3g14840.2 68416.m01875 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain; contains 2 predicted transmembrane domains
          Length = 988

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 268 WISLGTQAAIMRGEIIILPKAVSVDGCEGNFTVPKEPSMST 308
           W   GTQA  +RG    L  AVSVD    +F  PKEP   T
Sbjct: 537 WAGKGTQAIPVRGVYGPLISAVSVD---PDFIPPKEPGTGT 574


>At3g14460.1 68416.m01832 disease resistance protein (NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1424

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 2/88 (2%)

Query: 145 SIPALPGIFMSGVFSAALSSMSTGLNSMCGVIFEDLIRPAYNKPITEKNASFIMKIIVVA 204
           +IP +P       FS +    S    S+CG  F   I P +N P + ++     K++   
Sbjct: 510 NIPEIPSTTRHFSFSRSQCDASVAFRSICGAEFLRTILP-FNSPTSLESLQLTEKVLNPL 568

Query: 205 IGATCVALVFLVEHMGALIQAGKSLAGI 232
           + A     +  + H   +    KSL G+
Sbjct: 569 LNALSGLRILSLSHY-QITNLPKSLKGL 595


>At5g39390.1 68418.m04772 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam PF00560:
           Leucine Rich Repeat and PF00069: Protein kinase domain
          Length = 502

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 10/72 (13%)

Query: 144 GSIPALPGIFMSGVFSAALSSMSTGLNSMCGVIFEDLIRPAYNKPITEKNASFIMKIIVV 203
           GS+P   G+F +G   +       G  ++CG + E  ++P    P  +K  S   K + V
Sbjct: 119 GSVPT-KGVFQNGTTVSVF-----GNENLCGGVIEMQLKPCIESPRQKKPFSLGEK-VAV 171

Query: 204 AIGATCVALVFL 215
            +G   VAL+FL
Sbjct: 172 GVG---VALLFL 180


>At2g37700.1 68415.m04623 CER1 protein, putative similar to CER1
           GI:1199467 and maize gl1 homolog (glossy1 locus)
           GI:1209703 from [Arabidopsis thaliana]; may be involved
           in wax biosynthesis; contains a SUR2-type
           hydroxylase/desaturase catalytic domain (PS50242)
          Length = 493

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 258 GGISSTLLVGWISLGTQAAIMRGEIIILPKAVSVDGCEGNFTVPKEPSMSTETE 311
           G +++ +++  I +GT+  + RG+I  + +A+    C+      K PS ST  E
Sbjct: 430 GSLAAEVVLHSIPVGTKEVLFRGQITKVARAIVFSLCQNAI---KVPSFSTNGE 480


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.325    0.138    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,469,282
Number of Sequences: 28952
Number of extensions: 232638
Number of successful extensions: 748
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 748
Number of HSP's gapped (non-prelim): 7
length of query: 320
length of database: 12,070,560
effective HSP length: 81
effective length of query: 239
effective length of database: 9,725,448
effective search space: 2324382072
effective search space used: 2324382072
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 59 (27.9 bits)