Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000686-TA|BGIBMGA000686-PA|IPR005399|KCNAB voltage-gated
K+ channel, beta subunit, IPR001395|Aldo/keto reductase
         (529 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    28   0.14 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    25   1.3  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    24   3.0  
AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochr...    22   9.2  

>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 0.14
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 458 VEQFKENIHALQVYIKKIFKVCVKSFKLLQQSPLRFDVEVCIKLFNENPIFQNETHDHFV 517
           V  F + I  +Q++   I K C+ +  L+Q++P      +C KL +   IF   T++  +
Sbjct: 289 VVTFLKFIKKIQIFGIMITKACMSASNLIQRTP-----NICYKLLSNLGIFPKTTNEQLL 343


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 2   HCKGVEGGGKEGSQMSRSESTVSRCTPHTPLGLPDSASVDSNPMPTIYRCRAPIASLD 59
           H K   G GK+GS  S S+S  +  +  T   +   AS++  P PT       +  LD
Sbjct: 393 HVKTHNGNGKKGSSDSCSDSEENSQSDITN-NVNSPASMNQTPPPTAQMGLDMVTGLD 449


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 11/47 (23%), Positives = 22/47 (46%)

Query: 471 YIKKIFKVCVKSFKLLQQSPLRFDVEVCIKLFNENPIFQNETHDHFV 517
           Y  KIF +  +  + L + P  +++    KL+N N    ++    F+
Sbjct: 389 YCGKIFNLTTRQVRTLYKLPPNYEIRHKFKLWNFNNQISDDNPARFL 435


>AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 9.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 212 LQVEYIDVVLLHKVDPVCPMEELVRVMN 239
           LQ++Y++ VLL  +    P+  + RV+N
Sbjct: 43  LQMKYLERVLLETLRMYPPVPIITRVIN 70


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.135    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,396
Number of Sequences: 317
Number of extensions: 5233
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 4
length of query: 529
length of database: 114,650
effective HSP length: 60
effective length of query: 469
effective length of database: 95,630
effective search space: 44850470
effective search space used: 44850470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)